Construct: ORF TRCN0000480809

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009973.1_s317c1
Derived from:
ccsbBroadEn_00772
DNA Barcode:
ATACACATAAGGATTATTCCCCCG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HOXA6 (3203)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480809
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3203 HOXA6 homeobox A6 NM_024014.4 100% 100%
2 mouse 15403 Hoxa6 homeobox A6 NM_010454.1 92.8% 96.1% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
765
ORF length:
699
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag ttcctatttt gtgaatccca ctttccccgg gagccttccc agcggccagg
121actccttctt gggccagctg cccctctacc aggctggcta tgacgcgctg aggcccttcc
181cggcctcgta cggggcgtcg agtctcccgg acaagacgta cacctcacct tgtttctacc
241aacagtccaa ctcggtcctg gcctgcaacc gggcgtccta cgagtacggg gcctcgtgtt
301tctattctga taaggacctc agtggcgcct cgccctcggg cagtggcaag cagaggggcc
361ccggggacta cctgcacttt tctcccgagc agcagtacaa acccgacagc agcagcgggC
421AGGGCAAAGC ACTCCATGAC GAAGGCGCCG ACCGGAAGTA CACGAGCCCG GTTTACCCTT
481GGATGCAGCG GATGAACTCC TGCGCGGGTG CTGTGTATGG GAGCCATGGG CGCCGAGGCC
541GCCAGACCTA CACGCGCTAC CAGACACTGG AGCTGGAGAA GGAGTTCCAC TTCAACCGCT
601ACCTGACACG GCGCCGCCGC ATCGAGATCG CCAACGCGCT CTGCCTCACC GAGCGCCAGA
661TCAAGATCTG GTTCCAGAAC CGCCGCATGA AGTGGAAAAA GGAAAACAAG CTCATCAATT
721CCACGCAGCC CAGCGGGGAG GACTCAGAGG CAAAGGCGGG CGAGTACCCA ACTTTCTTGT
781ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
841AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
901GAAAGGACGA ATACACATAA GGATTATTCC CCCGACGCGT TAAGTCgaca atcaacctct
961ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)