Construct: ORF TRCN0000480854
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007401.1_s317c1
- Derived from:
- ccsbBroadEn_09989
- DNA Barcode:
- CCCCTCGGTGCCCATACAAACCAC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZFP41 (286128)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000480854
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 286128 | ZFP41 | ZFP41 zinc finger protein | NM_001271156.3 | 99.8% | 100% | 69T>C |
| 2 | human | 286128 | ZFP41 | ZFP41 zinc finger protein | NM_173832.6 | 99.8% | 100% | 69T>C |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 663
- ORF length:
- 594
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggagaagcct gcaggcagaa aaaagaagac gccgacccca agggaggagg 121 cagacgtgca gaagagcgcg ctcagagagg agaaggtgtc cggggacaga aagccacctg 181 agaggcccac tgtgcccagg aagccccgca cagagccctg cctgagtcct gaagacgaag 241 agcacgtctt tgatgccttc GACGCTTCAT TTAAAGATGA CTTTGAGGGG GTTCCCGTGT 301 TCATTCCTTT TCAGAGGAAG AAACCCTATG AGTGCAGTGA GTGTGGGCGG ATCTTTAAGC 361 ACAAGACAGA CCACATTCGC CATCAGAGGG TCCACACTGG AGAGAAGCCC TTCAAGTGTG 421 CGCAGTGCGG GAAGGCCTTC CGGCACAGCT CTGACGTCAC CAAACACCAG AGGACTCACA 481 CGGGAGAGAA GCCCTTCAAA TGCGGGGAGT GCGGGAAAGC CTTTAACTGC GGCTCCAATC 541 TCCTGAAACA TCAGAAGACG CACACCGGGG AGAAGCCCTA CGAATGCACG CACTGTGGGA 601 AAGCCTTTGC CTACAGCTCC TGTCTCATCC GCCATCAGAA ACGCCACCCT CGGAAGAAGC 661 CCTTGCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC 721 TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT 781 GGCTTTATAT ATCTTGTGGA AAGGACGACC CCTCGGTGCC CATACAAACC ACACGCGTTA 841 AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt