Construct: ORF TRCN0000480855

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007359.1_s317c1
Derived from:
ccsbBroadEn_15980
DNA Barcode:
CTTAGCTTAGGGGTGTAGGCTCCT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CCDC28B (79140)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480855
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79140 CCDC28B coiled-coil domain containi... NM_024296.4 100% 100%
2 human 79140 CCDC28B coiled-coil domain containi... XM_017002307.1 100% 100%
3 human 79140 CCDC28B coiled-coil domain containi... XM_017002306.2 81.3% 79.8% (many diffs)
4 human 79140 CCDC28B coiled-coil domain containi... NM_001301011.2 79% 76.8% (many diffs)
5 human 79140 CCDC28B coiled-coil domain containi... XM_011542113.3 79% 76.8% (many diffs)
6 human 79140 CCDC28B coiled-coil domain containi... XM_017002308.2 56.8% 55% (many diffs)
7 human 79140 CCDC28B coiled-coil domain containi... XM_017002309.2 56.8% 55% (many diffs)
8 mouse 66264 Ccdc28b coiled coil domain containi... NM_025455.2 88.8% 96.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
666
ORF length:
600
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga tgacaaaaag aagaaacgga gtcccaagcc ctgcctggcc cagccagccc
121aggccccagg cacactacgg agggtccctg tgcctaccag ccacagcggc tccttggccc
181taggacttcc tcatctgcca tcccccaagc agcgggccaa gttcaagaga gtaggcaaag
241agaagtgccg cccagtcctg gctggaggtg gaagcggctc tgcaggcacg cccctgcagc
301actccTTCCT GACCGAGGTG ACTGATGTCT ATGAGATGGA GGGGGGACTC CTGAACCTGC
361TCAATGATTT CCACTCTGGC CGGCTGCAGG CCTTCGGGAA GGAATGCTCC TTTGAGCAGC
421TGGAGCACGT TCGGGAGATG CAGGAGAAGC TAGCCCGGCT GCACTTCAGC CTGGATGTGT
481GTGGGGAGGA GGAGGACGAT GAAGAGGAAG AGGATGGGGT CACTGAGGGG CTGCCAGAGG
541AGCAGAAGAA GACAATGGCT GACCGTAACC TGGACCAGCT GCTTAGCAAT CTGGAAGACC
601TCAGTAATTC TATCCAGAAG CTGCACCTGG CCGAGAACGC CGAGCCTGAG GAGCAGTCCG
661CTGCGTACCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC
721TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT
781CTTGGCTTTA TATATCTTGT GGAAAGGACG ACTTAGCTTA GGGGTGTAGG CTCCTACGCG
841TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt

Download FASTA (ORF) (Full)