Construct: ORF TRCN0000480958
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF019011.3_s317c1
- Derived from:
- ccsbBroadEn_14724
- DNA Barcode:
- ATCCTACGCACTACGAATTCCACA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DDR2 (4921)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000480958
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4921 | DDR2 | discoidin domain receptor t... | NM_001014796.3 | 99.9% | 99.8% | 2245C>T;2565delG |
| 2 | human | 4921 | DDR2 | discoidin domain receptor t... | NM_001354982.2 | 99.9% | 99.8% | 2245C>T;2565delG |
| 3 | human | 4921 | DDR2 | discoidin domain receptor t... | NM_001354983.2 | 99.9% | 99.8% | 2245C>T;2565delG |
| 4 | human | 4921 | DDR2 | discoidin domain receptor t... | NM_006182.4 | 99.9% | 99.8% | 2245C>T;2565delG |
| 5 | human | 4921 | DDR2 | discoidin domain receptor t... | XM_011509587.2 | 99.9% | 99.8% | 2245C>T;2565delG |
| 6 | human | 4921 | DDR2 | discoidin domain receptor t... | XM_011509588.3 | 62.8% | 58.8% | (many diffs) |
| 7 | mouse | 18214 | Ddr2 | discoidin domain receptor f... | NM_022563.2 | 90% | 95.7% | (many diffs) |
| 8 | mouse | 18214 | Ddr2 | discoidin domain receptor f... | XM_006496696.3 | 90% | 95.7% | (many diffs) |
| 9 | mouse | 18214 | Ddr2 | discoidin domain receptor f... | XM_006496697.3 | 90% | 95.7% | (many diffs) |
| 10 | mouse | 18214 | Ddr2 | discoidin domain receptor f... | XM_006496698.3 | 90% | 95.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2634
- ORF length:
- 2565
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gatcctgatt cccagaatgc tcttggtgct gttcctgctg ctgcctatct 121 tgagttctgc aaaagctcag gttaatccag ctatatgccg ctatcctctg ggcatgtcag 181 gaggccagat tccagatgag gacatcacag cttccagtca gtggtcagag tccacagctg 241 ccaaatatgg aaggctggac tcagaagaag gggatggagc ctggtgccct gagattccag 301 tggaacctga tgacctgaag gagtttctgc agattgactt gcacaccctc cattttatca 361 ctctggtggg gacccagggg cgccatgcag gaggtcatgg catcgagttt gcccccatgt 421 acaagatcaa ttacagtcgg gatggcactc gctggatctc ttggcggaac cgtcatggga 481 aacaggtgct ggatggaaat agtaacccct atgacatttt cctaaaggac ttggagccgc 541 ccattgtagc cagatttgtc cggttcattc cagtcaccga ccactccatg aatgtgtgta 601 tgagagtgga gctttacggc tgtgtctggc tagatggctt ggtgtcttac aatgctccag 661 ctgggcagca gtttgtactc cctggaggtt ccatcattta tctgaatgat tctgtctatg 721 atggagctgt tggatacagc atgacagaag ggctaggcca attgaccgat ggtgtgtctg 781 gcctggacga tttcacccag acccatgaat accacgtgtg gcccggctat gactatgtgg 841 gctggcggaa cgagagtgcc accaatggct acattgagat catgtttgaa tttgaccgca 901 tcaggaattt cactaccatg aaggtccact gcaacaacat gtttgctaaa ggtgtgaaga 961 tctttaagga ggtacagtgc tacttccgct ctgaagccag tgagtgggaa cctaatgcca 1021 tttccttccc ccttgtcctg gatgacgtca accccagtgc tcggtttgtc acggtgcctc 1081 tccaccaccg aatggccagt gccatcaagt gtcaatacca ttttgcagat acctggatga 1141 tgttcagtga gatcaccttc caatcagatg ctgcaatgta caacaactct gaagccctgc 1201 ccacctctcc tatggcaccc acaacctatg atccaatgct taaagttgat gacagcaaca 1261 ctcggatcct gattggctgc ttggtggcca tcatctttat cctcctggcc atcattgtca 1321 tcatcctctg gaggcagttc tggcagaaaa tgctggagaa ggcttctcgg aggatgctgg 1381 atgatgaaat gacagtcagc ctttccctgc caagtgattc tagcatgttc aacaataacc 1441 gctcctcatc acctagtgaa caagggtcca actcgactta cgatcgcatc tttccccttc 1501 gccctgacta ccaggagcca tccaggctga tacgaaaact cccagaattt gctccagggg 1561 aggaggagtc aggctgcagc ggtgttgtga agccagtcca gcccagtggc cctgaggggg 1621 tgccccacta tgcagaggct gacatagtga acctccaagg agtgacagga ggcaacacat 1681 actcagtgcc tgccgtcacc atggacctgc tctcaggaaa agatgtggct gtggaggagt 1741 tccccaggaa actcctaact ttcaaagaga agctgggaga aggacagttt ggggaggttc 1801 atctctgtga agtggaggga atggaaaaat tcaaagacaa agattttgcc ctagatgtca 1861 gtgccaacca gcctgtcctg gtggctgtga aaatgctccg agcagatgcc aacaagaatg 1921 ccaggaatga ttttcttaag gagataaaga tcatgtctcg gctcaaggac ccaaacatca 1981 tccatctatt agctgtgtgt atcactgatg accctctctg tatgatcact gaatacatgg 2041 agaatggaga tctcaatcag tttctttccc gccacgagcc ccctaattct tcctccagcg 2101 atgtacgcac tgtcagttac accaatctga agtttatggc tacccaaatt gcctctggca 2161 tgaagtacct ttcctctctt aattttgttc accgagatct ggCCACACGA AACTGTTTAG 2221 TGGGTAAGAA CTACACAATC AAGATAGCTG ACTTTGGAAT GAGCAGGAAC CTGTACAGTG 2281 GTGACTATTA CCGGATCCAG GGCCGGGCAG TGTTCCCTAT CCGCTGGATG TCTTGGGAGA 2341 GTATCTTGCT GGGCAAGTTC ACTACAGCAA GTGATGTGTG GGCCTTTGGG GTTACTTTGT 2401 GGGAGACTTT CACCTTTTGT CAAGAACAGC CCTATTCCCA GCTGTCAGAT GAACAGGTTA 2461 TTGAGAATAC TGGAGAGTTC TTCCGAGACC AAGGGAGGCA GACTTACCTC CCTCAACCAG 2521 CCATTTGTCC TGACTCTGTG TATAAGCTGA TGCTCAGCTG CTGGAGAAGA GATACGAAGA 2581 ACCGTCCCTC ATTCCAAGAA ATCCACCTTC TGCTCCTTCA ACAAGGCGAC GAGCCAACTT 2641 TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT 2701 CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT 2761 CTTGTGGAAA GGACGAATCC TACGCACTAC GAATTCCACA ACGCGTTAAG TCgacaatca 2821 acctctggat tacaaaattt gtgaaagatt