Construct: ORF TRCN0000481025
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF019014.3_s317c1
- Derived from:
- ccsbBroadEn_14964
- DNA Barcode:
- ACTTTATCTCACAGCTGTTTTGCG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MERTK (10461)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000481025
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10461 | MERTK | MER proto-oncogene, tyrosin... | NM_006343.3 | 99.9% | 100% | 2996_2997delTG |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 3066
- ORF length:
- 2997
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggggccggcc ccgctgccgc tgctgctggg cctcttcctc cccgcgctct 121 ggcgtagagc tatcactgag gcaagggaag aagccaagcc ttacccgcta ttcccgggac 181 cttttccagg gagcctgcaa actgaccaca caccgctgtt atcccttcct cacgccagtg 241 ggtaccagcc tgccttgatg ttttcaccaa cccagcctgg aagaccacat acaggaaacg 301 tagccattcc ccaggtgacc tctgtcgaat caaagcccct accgcctctt gccttcaaac 361 acacagttgg acacataata ctttctgaac ataaaggtgt caaatttaat tgctcaatca 421 gtgtacctaa tatataccag gacaccacaa tttcttggtg gaaagatggg aaggaattgc 481 ttggggcaca tcatgcaatt acacagtttt atccagatga tgaagttaca gcaataatcg 541 cttccttcag cataaccagt gtgcagcgtt cagacaatgg gtcgtatatc tgtaagatga 601 aaataaacaa tgaagagatc gtgtctgatc ccatctacat cgaagtacaa ggacttcctc 661 actttactaa gcagcctgag agcatgaatg tcaccagaaa cacagccttc aacctcacct 721 gtcaggctgt gggcccgcct gagcccgtca acattttctg ggttcaaaac agtagccgtg 781 ttaacgaaca gcctgaaaaa tccccctccg tgctaactgt tccaggcctg acggagatgg 841 cggtcttcag ttgtgaggcc cacaatgaca aagggctgac cgtgtccaag ggagtgcaga 901 tcaacatcaa agcaattccc tccccaccaa ctgaagtcag catccgtaac agcactgcac 961 acagcattct gatctcctgg gttcctggtt ttgatggata ctccccgttc aggaattgca 1021 gcattcaggt caaggaagct gatccgctga gtaatggctc agtcatgatt tttaacacct 1081 ctgccttacc acatctgtac caaatcaagc agctgcaagc cctggctaat tacagcattg 1141 gtgtttcctg catgaatgaa ataggctggt ctgcagtgag cccttggatt ctagccagca 1201 cgactgaagg agccccatca gtagcacctt taaatgtcac tgtgtttctg aatgaatcta 1261 gtgataatgt ggacatcaga tggatgaagc ctccgactaa gcagcaggat ggagaactgg 1321 tgggctaccg gatatcccac gtgtggcaga gtgcagggat ttccaaagag ctcttggagg 1381 aagttggcca gaatggcagc cgagctcgga tctctgttca agtccacaat gctacgtgca 1441 cagtgaggat tgcagccgtc accagagggg gagttgggcc cttcagtgat ccagtgaaaa 1501 tatttatccc tgcacacggt tgggtagatt atgccccctc ttcaactccg gcgcctggca 1561 acgcagatcc tgtgctcatc atctttggct gcttttgtgg atttattttg attgggttga 1621 ttttatacat ctccttggcc atcagaaaaa gagtccagga gacaaagttt gggaatgcat 1681 tcacagagga ggattctgaa ttagtggtga attatatagc aaagaaatcc ttctgtcggc 1741 gagccattga acttacctta catagcttgg gagtcagtga ggaactacaa aataaactag 1801 aagatgttgt gattgacagg aatcttctaa ttcttggaaa aattctgggt gaaggagagt 1861 ttgggtctgt aatggaagga aatcttaagc aggaagatgg gacctctctg aaagtggcag 1921 tgaagaccat gaagttggac aactcttcac agcgggagat cgaggagttt ctcagtgagg 1981 cagcgtgcat gaaagacttc agccacccaa atgtcattcg acttctaggt gtgtgtatag 2041 aaatgagctc tcaaggcatc ccaaagccca tggtaatttt acccttcatg aaatacgggg 2101 acctgcatac ttacttactt tattcccgat tggagacagg accaaagcat attcctctgc 2161 agacactatt gaagttcatg gtggatattg ccctgggaat ggagtatctg agcaacagga 2221 attttcttca tcgagattta gctgctcgaa actgcatgtt gcgagatgac atgactgtct 2281 gtgttgcgga cttcggcctc tctaagaaga tttacagtgg cgattattac cgccaaggcc 2341 gcattgctaa gatgcctgtt aaatggatcg ccatagaaag tcttgcagac cgagtctaca 2401 caagtaaaag tgatgtgtgg gcatttggcg tgaccatgtg ggaaatagct acgcggggaa 2461 tgactcccta tcctggggtc cagaaccatg agatgtatga ctatcttctc catggccaca 2521 ggttgaagca gcccgaagac tgcctggatg aactgtatga aataatgtac tcttgctgga 2581 gaaccgatcc cttagaccgc cccacctttt cagtattgag gctgcagcta gaaaaactct 2641 tagaaagttt gcctgacgTT CGGAACCAAG CAGACGTTAT TTACGTCAAT ACACAGTTGC 2701 TGGAGAGCTC TGAGGGCCTG GCCCAGGGCT CCACCCTTGC TCCACTGGAC TTGAACATCG 2761 ACCCTGACTC TATAATTGCC TCCTGCACTC CCCGCGCTGC CATCAGTGTG GTCACAGCAG 2821 AAGTTCATGA CAGCAAACCT CATGAAGGAC GGTACATCCT GAATGGGGGC AGTGAGGAAT 2881 GGGAAGATCT GACTTCTGCC CCCTCTGCTG CAGTCACAGC TGAAAAGAAC AGTGTTTTAC 2941 CGGGGGAGAG ACTTGTTAGG AATGGGGTCT CCTGGTCCCA TTCGAGCATG CTGCCCTTGG 3001 GAAGCTCATT GCCCGATGAA CTTTTGTTTG CTGACGACTC CTCAGAAGGC TCAGAAGTCC 3061 TGATGCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC 3121 TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT 3181 GGCTTTATAT ATCTTGTGGA AAGGACGAAC TTTATCTCAC AGCTGTTTTG CGACGCGTTA 3241 AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt