Construct: ORF TRCN0000481137
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015142.1_s317c1
- Derived from:
- ccsbBroadEn_16028
- DNA Barcode:
- CACATTCAGTTCACTCCAATTATC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ELMOD3 (84173)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000481137
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84173 | ELMOD3 | ELMO domain containing 3 | NM_001135021.2 | 99.7% | 99.7% | 846C>A;882C>T;974G>T |
| 2 | human | 84173 | ELMOD3 | ELMO domain containing 3 | NM_001135022.2 | 99.7% | 99.7% | 846C>A;882C>T;974G>T |
| 3 | human | 84173 | ELMOD3 | ELMO domain containing 3 | NM_001135023.2 | 99.7% | 99.7% | 846C>A;882C>T;974G>T |
| 4 | human | 84173 | ELMOD3 | ELMO domain containing 3 | NM_001329791.2 | 99.7% | 99.7% | 846C>A;882C>T;974G>T |
| 5 | human | 84173 | ELMOD3 | ELMO domain containing 3 | NM_001329792.2 | 99.7% | 99.7% | 846C>A;882C>T;974G>T |
| 6 | human | 84173 | ELMOD3 | ELMO domain containing 3 | NM_001329793.2 | 99.7% | 99.7% | 846C>A;882C>T;974G>T |
| 7 | human | 84173 | ELMOD3 | ELMO domain containing 3 | XM_024453169.1 | 86.6% | 83% | (many diffs) |
| 8 | human | 84173 | ELMOD3 | ELMO domain containing 3 | XM_024453170.1 | 86.6% | 83% | (many diffs) |
| 9 | human | 84173 | ELMOD3 | ELMO domain containing 3 | XM_024453171.1 | 86.6% | 83% | (many diffs) |
| 10 | human | 84173 | ELMOD3 | ELMO domain containing 3 | XM_024453172.1 | 86.6% | 83% | (many diffs) |
| 11 | human | 84173 | ELMOD3 | ELMO domain containing 3 | XR_001738979.1 | 46.5% | (many diffs) | |
| 12 | human | 84173 | ELMOD3 | ELMO domain containing 3 | NR_138131.2 | 45.1% | (many diffs) | |
| 13 | human | 84173 | ELMOD3 | ELMO domain containing 3 | XR_001738978.1 | 44.7% | (many diffs) | |
| 14 | human | 84173 | ELMOD3 | ELMO domain containing 3 | NR_138133.2 | 43.2% | (many diffs) | |
| 15 | human | 84173 | ELMOD3 | ELMO domain containing 3 | NR_138132.2 | 38.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1209
- ORF length:
- 1143
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgaa tgaaaaatct tgctctttcc atagtaaaga agaattaaga gatggacagg 121 gtgaaagatt gtctgctgga tattctccat catatgacaa ggacaagagt gttctggctt 181 tcagaggaat ccctatctca gagttgaaga accatggcat tctccaggct ctgaccacag 241 aagcttatga atgggagcca cgtgttgtga gtacagaggt ggtcagagcc caagaagaat 301 gggaagctgt ggacaccatc cagccagaga cagggagcca agctagctca gagcagcctg 361 ggcagctaat ctccttcagt gaggccctgc agcacttcca gactgtggac ctttccccct 421 tcaagaaaag aatccagcca actattcgaa ggactgggct cgccgccctc cgacactacc 481 tcttcgggcc tccaaagctc caccagcgcc ttcgggaaga aagggacttg gtcctgacca 541 ttgctcagtg tggcctggat agccaagacc cagtgcatgg ccgagtcctc cagaccatct 601 ataagaagct gaccggctcc aagtttgact gtgcccttca tggaaaccac tgggaggacc 661 tgggctttca gggagcgaat ccagccacag acctgagagg cgcaggcttc cttgccctcc 721 tgcatcTGCT CTACCTGGTG ATGGACTCAA AGACCTTGCC GATGGCGCAG GAGATTTTCC 781 GCCTGTCTCG TCACCACATC CAGCAATTCC CTTTCTGTTT GATGTCCGTG AACATCACCC 841 ACATTGCCAT CCAGGCCTTG AGAGAGGAGT GTCTCTCCAG AGAGTGTAAT CGGCAGCAGA 901 AGGTCATCCC AGTGGTGAAC AGCTTCTATG CCGCCACATT CCTCCATCTC GCACATGTCT 961 GGAGGACACA GCGGAAGACC ATCTCAGACT CGGGCTTTGT CCTCAAAGAG TTGGAAGTAT 1021 TGGCCAAGAA GAGCCCACTG CGGCTGCTCA AGACCCTGGA GCTGTACTTG GCCAGGGTGT 1081 CAAAGGGACA GGCCTCCTTG TTGGGAGCAC AGAAGTGCTA TGGGCCAGAA GCCCCTCCCT 1141 TCAAGGATCT CACCTTCACA GGTGAGAGTG ACCTGCAGTC TCACTCATCC GAAGGCGTAT 1201 GGCTGATCTG CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC 1261 CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA 1321 TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGACACATT CAGTTCACTC CAATTATCAC 1381 GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt