Construct: ORF TRCN0000481339
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002663.1_s317c1
- Derived from:
- ccsbBroadEn_10258
- DNA Barcode:
- TCCACTATCATGCACACGATATAC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LPAL2 (80350)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000481339
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 80350 | LPAL2 | lipoprotein(a) like 2, pseu... | NR_028093.1 | 20.1% | 1_117del;514_1968del | |
| 2 | human | 80350 | LPAL2 | lipoprotein(a) like 2, pseu... | NR_028092.1 | 19.4% | 1_117del;514_2041del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 465
- ORF length:
- 396
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggaacataag gaagtggttc TTCTACTTCT GTTATTTCTG AAATCAGCAC 121 CGACTGAGAC AGGGCCTTCT GTGCAGGAGT GCTACCACAG TAATGGACAG AGTTATCGAG 181 GCACATACTT CACCACTGTC ACAGGAAGAA CCTGCCAAGC TTGGTCATCT ATGACGCCAC 241 ACCAGCACAG TAGAACCCCA GAAAAGTACC CAAATGATGG CTTGATCTCG AACTACTGCA 301 GGAATCCGGA TTGTTCGGCA GGCCCTTGGT GTTATACGAC GGATCCCAAT GTCAGGTGGG 361 AGTACTGCAA CCTGACACGG TGCTCAGACG ATGAAGGGAC TGTGTTCGTG CCTCTGACTG 421 TTATCCCAGT TCCAAGCCTA GAGGATTCAT TCATACAAGT GGCTTTGCCA ACTTTCTTGT 481 ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT 541 AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG 601 GAAAGGACGA TCCACTATCA TGCACACGAT ATACACGCGT TAAGTCgaca atcaacctct 661 ggattacaaa atttgtgaaa gatt