Construct: ORF TRCN0000481410

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004995.1_s317c1
Derived from:
ccsbBroadEn_11799
DNA Barcode:
TTTTGTCCGACGATTTGCACCGCT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LRIG1 (26018)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000481410
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 26018 LRIG1 leucine rich repeats and im... NM_015541.2 93.5% 93.2% (many diffs)
2 human 26018 LRIG1 leucine rich repeats and im... XM_017006134.2 91.3% 91% (many diffs)
3 human 26018 LRIG1 leucine rich repeats and im... XM_011533578.2 89.2% 88.9% (many diffs)
4 human 26018 LRIG1 leucine rich repeats and im... XM_017006135.1 72.3% 69.6% (many diffs)
5 human 26018 LRIG1 leucine rich repeats and im... XM_011533579.3 70.3% 70.2% 0_1ins780;380_381ins72;1151_1291del
6 human 26018 LRIG1 leucine rich repeats and im... XM_017006136.2 70.3% 70.2% 0_1ins780;380_381ins72;1151_1291del
7 mouse 16206 Lrig1 leucine-rich repeats and im... XM_006505621.2 74% 73.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3276
ORF length:
3210
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc gcggccggtc cggggagggc tcggggcccc gcgccgctcg ccttgccttc
121tccttctctg gctggttttg gttcggctgg agccggtgac cgccgcggcc ggcccgcggg
181cgccctgcgc ggccgcctgc acttgcgctg gggactcgct ggactgcggt gggcgcgggc
241tggctgcgtt gcccggggac ctgccctcct ggacgcggag cctaaacctg agttacaaca
301aattctctga gattgaccct gctggttttg aggacttgcc gaacctacag gaagtgtacc
361tcaataataa tgagttgaca gcggtaccat ccctgggcgc tgcttcatca catgtcgtct
421ctctctttct gcagcacaac aagattcgca gcgtggaggg gagccagctg aaggcctacc
481tttccttaga agtgttagat ctgagtttga acaacatcac ggaagtgcgg aacacctgct
541ttccacacgg accgcctata aaggagctca acctggcagg caatcggatt ggcaccctgg
601agttgggagc atttgatggt ctgtcacggt cgctgctaac tcttcgcctg agcaaaaaca
661ggatcaccca gcttcctgta agagcattca agctacccag gctgacacaa ctggacctca
721atcggaacag gattcggctg atagagggcc tcaccttcca ggggctcaac agcttggagg
781tgctgaagct tcagcgaaac aacatcagca aactgacaga tggggccttc tggggactgt
841ccaagatgca tgtgctgcac ctggagtaca acagcctggt agaagtgaac agcggctcgc
901tctacggcct cacggccctg catcagctcc acctcagcaa caattccatc gctcgcattc
961accgcaaggg ctggagcttc tgccagaagc tgcatgagtt ggtcctgtcc ttcaacaacc
1021tgacacggct ggacgaggag agcctggccg agctgagcag cctgagtgtc ctgcgtctca
1081gccacaattc catcagccac attgcggagg gtgccttcaa gggactcagg agcctgcgag
1141tcttggatct ggaccataac gagatttcgg gcacaataga ggacacgagc ggcgccttct
1201cagggctcga cagcctcagc aagctccttt tattagagcc atcccagtct gctggctgca
1261gctccccgtc ccagccccat atgtctgctg ggggaaggac tctgtttgga aacaagatca
1321agtctgtggc taagagagca ttctcggggc tggaaggcct ggagcacctg aaccttggag
1381ggaatgcgat cagatctgtc cagtttgatg cctttgtgaa gatgaagaat cttaaagagc
1441tccatatcag cagcgacagc ttcctgtgtg actgccagct gaagtggctg cccccgtggc
1501taattggcag gatgctgcag gcctttgtga cagccacctg tgcccaccca gaatcactga
1561agggtcagag cattttctct gtgccaccag agagtttcgt gtgcgatgac ttcctgaagc
1621cacagatcat cacccagcca gaaaccacca tggctatggt gggcaaggac atccggttta
1681catgctcagc agccagcagc agcagctccc ccatgacctt tgcctggaag aaagacaatg
1741aagtcctgac caatgcagac atggagaact ttgtccacgt ccacgcgcag gacggggaag
1801tgatggagta caccaccatc ctgcacctcc gtcaggtcac tttcgggcac gagggccgct
1861accaatgtgt catcaccaac cactttggct ccacctattc acataaggcc aggctcaccg
1921tgaatgtgtt gccatcattc accaaaacgc cccacgacat aaccatccgg accaccacca
1981tggcccgcct cgaatgtgct gccacaggtc acccaaaccc tcagattgcc tggcagaagg
2041atggaggcac ggatttcccc gctgcccaga ccccatcctt ggtggtcccc ttggaagacc
2101gtgtggtatc tgtgggagaa acagtggccc tccaatgcaa agccacgggg aaccctccgc
2161cccgcatcac ctggttcaag ggggaccgcc cgctgagcct cactgagcgg caccacttga
2221cccctgacaa ccagctcctg gtggttcaga acgtggtggc agaggatgcg ggccgatata
2281cctgtgagat gtccaacacc ctgggcacgg agcgagctca cagccagctg agcgtcctgc
2341ccgcagcagg ctgcaggaag gatgggacca cggtaggcat cttcaccatt gctgtcgtga
2401gcagcatcgt cctgacgtca ctggtctggg tgtgcatcat ctaccagacc aggaagaaga
2461gtgaagagta cagtgtcacc aacacagatg aaaccgtcgt gccaccagat gttccaagct
2521acctctcttc tcaggggacc ctttctgacc gacaagaaac cgtggtcagg accgagggtg
2581gccctcaggc caatgggcac attgagagca atggtgtgtg tccaagagat gcaagccact
2641ttccagagcc cgacactcac agcgttgcct gcaggcagcc aaagctctgt gctgggtctg
2701cgtatcacaa agagccgtgg aaagcgatgg agaaagctga agggacacct gggccacata
2761agatggaaca cggtggccgg gtcgtatgca gtgactgcaa caccgaagtg gactgttact
2821ccaggggaca agCCTTCCAC CCCCAGCCTG TGTCCAGAGA CAGCGCACAG CCAAGTGCGC
2881CAAATGGCCC GGAGCCGGGT GGGAGTGACC AAGAGCATTC TCCACATCAC CAGTGCAGCA
2941GGACTGCCGC TGGGTCCTGC CCCGAGTGCC AAGGGTCGCT CTACCCCAGT AACCACGATA
3001GAATGCTGAC GGCTGTGAAG AAAAAGCCAA TGGCATCTCT AGATGGGAAA GGGGATTCTT
3061CCTGGACTTT AGCAAGGTTG TATCACCCGG ACTCCACAGA GCTACAGCCT GCATCTTCAT
3121TAACTTCAGG CAGTCCAGAG CGCGCGGAAG CCCAGTACTT GCTTGTTTCC AATGGCCACC
3181TCCCCAAAGC ATGTGACGCC AGTCCCGAGT CCACGCCACT GACAGGACAG CTCCCCGGGA
3241AACAGAGGGT GCCACTGCTG TTGGCACCAA AAAGCTACTC AACTTTCTTG TACAAAGTGG
3301TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA
3361CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG
3421ATTTTGTCCG ACGATTTGCA CCGCTACGCG TTAAGTCgac aatcaacctc tggattacaa
3481aatttgtgaa agatt

Download FASTA (ORF) (Full)