Construct: ORF TRCN0000487728
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF021822.1_s317c1
- DNA Barcode:
- GTGGCAAAGGTCACCACTGCAATC
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- SLCO1A2 (6579)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000487728
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6579 | SLCO1A2 | solute carrier organic anio... | NM_021094.4 | 100% | 100% | |
| 2 | human | 6579 | SLCO1A2 | solute carrier organic anio... | NM_134431.3 | 100% | 100% | |
| 3 | human | 6579 | SLCO1A2 | solute carrier organic anio... | XM_005253474.3 | 100% | 100% | |
| 4 | human | 6579 | SLCO1A2 | solute carrier organic anio... | XM_011520818.1 | 100% | 100% | |
| 5 | human | 6579 | SLCO1A2 | solute carrier organic anio... | XM_011520819.1 | 100% | 100% | |
| 6 | human | 6579 | SLCO1A2 | solute carrier organic anio... | XM_024449138.1 | 100% | 100% | |
| 7 | human | 6579 | SLCO1A2 | solute carrier organic anio... | XM_024449139.1 | 100% | 100% | |
| 8 | human | 6579 | SLCO1A2 | solute carrier organic anio... | XM_011520820.3 | 97.9% | 96.5% | (many diffs) |
| 9 | human | 6579 | SLCO1A2 | solute carrier organic anio... | XM_005253477.3 | 97% | 97% | 0_1ins60 |
| 10 | human | 6579 | SLCO1A2 | solute carrier organic anio... | XM_017019849.1 | 89.2% | 89.2% | 1794_1794delGins217 |
| 11 | human | 6579 | SLCO1A2 | solute carrier organic anio... | XM_017019850.1 | 86.2% | 86.2% | 0_1ins60;1734_1734delGins217 |
| 12 | human | 6579 | SLCO1A2 | solute carrier organic anio... | XM_011520821.2 | 54% | 54% | 0_1ins924 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2079
- ORF length:
- 2010
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcaccat gggagaaact gagaaaagaa ttgaaaccca tagaataaga tgtctttcca 121 agttgaagat gtttctgttg gcaataacat gtgcatttgt atccaaaaca ctgtctggat 181 cttatatgaa ttccatgctc acacaaatag agagacaatt caacatccca acatctctag 241 ttggattcat taatggaagc tttgagattg gaaatctttt gttgattata tttgtgagtt 301 attttggaac caaactgcat agacctataa tgattggcat tggatgtgtg gttatgggct 361 taggctgttt cttaaaatca ctacctcatt tcctcatgaa ccaatatgaa tatgaatcta 421 cagtttcagt ttcaggcaac ttgtcctcaa acagtttctt gtgtatggaa aatggaaccc 481 agattttaag accaacgcag gatccatcag agtgtacaaa ggaagttaaa tcattaatgt 541 gggtgtacgt cctagtaggc aatattgtac gtggaatggg tgaaactccc atcctgcctt 601 tgggtatttc ctatatagaa gattttgcca aatttgaaaa ttctccttta tatattgggc 661 ttgtagaaac aggagctatt attggtcctt tgattggact tttgttggca tcattctgtg 721 caaatgttta tgttgacact ggatttgtga acacagatga tctgatcata actcccactg 781 acactcgttg ggtcggtgca tggtggtttg gctttctgat ttgtgcagga gttaacgtgc 841 tcactgccat tccttttttc tttttgccca acacacttcc aaaggaagga ctagagacta 901 atgctgacat cattaaaaat gaaaatgaag acaaacaaaa agaagaggtc aagaaggaaa 961 aatatggaat cactaaagat tttctacctt tcatgaaaag tctttcctgc aatccaattt 1021 atatgctttt catacttgta agtgtgatac agttcaatgc attcgttaac atgatctcct 1081 tcatgcctaa atacctagaa cagcaatatg gaatatcatc ttcagatgca atctttctaa 1141 tgggtattta taacttacct ccaatatgta ttggatatat aattggtggt ttaattatga 1201 agaagttcaa gattactgtc aaacaagctg cccacatagg atgttggtta tccttacttg 1261 agtatcttct ctatttttta tcttttctca tgacttgtga aaattcttca gttgttggaa 1321 taaatacctc ttatgaagga attccacaag atttatatgt ggaaaatgac atctttgctg 1381 attgcaatgt ggattgcaac tgtccatcta aaatatggga tcctgtgtgt ggaaacaatg 1441 gcttgtcata tctgtcagct tgtcttgctg gttgtgagac atccattgga acgggaataa 1501 acatggtgtt ccaaaattgc agctgtattc aaacatcagg aaattcatct gcagttcttg 1561 ggctgtgcga caaaggacct gactgttcct tgatgctcca gtacttccta atcttgtcag 1621 cgatgagcag tttcatttat tctttggctg ccatacctgg atatatggtt ctcttgaggt 1681 gtatgaaatc tgaagagaag tcccttggtg tgggattaca tacattttgc acaagagtat 1741 ttgctggcat tcctgcacct atatattttg gcgctttaat ggattccaca tgtttacact 1801 ggggaacttT GAAATGTGGT GAGTCAGGGG CATGCAGGAT ATATGATTCC ACCACCTTCA 1861 GATACATCTA CCTCGGATTG CCGGCAGCAC TAAGAGGATC AAGCTTTGTT CCAGCCTTAA 1921 TCATCTTAAT TCTTTTGAGG AAGTGTCATC TACCTGGTGA AAATGCCTCT TCAGGAACAG 1981 AGCTTATAGA GACAAAAGTC AAAGGGAAGG AAAATGAGTG CAAAGATATA TACCAAAAGT 2041 CCACGGTTTT GAAAGATGAT GAATTGAAAA CTAAATTGTA AGACCCAGCT TTCTTGTACA 2101 AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT 2161 AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA 2221 AGGACGAGTG GCAAAGGTCA CCACTGCAAT CACGCGTTAA GTCgacaatc aacctctgga 2281 ttacaaaatt tgtgaaagat t