Construct: ORF TRCN0000487839
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF020702.1_s317c1
- DNA Barcode:
- TTGGACACTTTAGTTCTCCCGCAA
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- CLK2 (1196)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000487839
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1196 | CLK2 | CDC like kinase 2 | NM_003993.4 | 100% | 100% | |
| 2 | human | 1196 | CLK2 | CDC like kinase 2 | NM_001294338.2 | 99.7% | 99.7% | 399_401delGCA |
| 3 | human | 1196 | CLK2 | CDC like kinase 2 | NM_001363704.2 | 99.7% | 99.7% | 168_169insAGC |
| 4 | human | 1196 | CLK2 | CDC like kinase 2 | XM_011509143.2 | 99.5% | 99.5% | 168_169insAGC;396_398delGCA |
| 5 | human | 1197 | CLK2P1 | CDC like kinase 2, pseudoge... | NR_002711.3 | 61.6% | (many diffs) | |
| 6 | human | 1196 | CLK2 | CDC like kinase 2 | NM_001294339.2 | 54.4% | 54.4% | 0_1ins681 |
| 7 | mouse | 12748 | Clk2 | CDC-like kinase 2 | NM_007712.4 | 92.3% | 96.7% | (many diffs) |
| 8 | mouse | 12748 | Clk2 | CDC-like kinase 2 | NM_001163432.2 | 92.2% | 96.5% | (many diffs) |
| 9 | mouse | 105943584 | Gm45927 | predicted gene, 45927 | NM_001310016.1 | 56.9% | 57.1% | (many diffs) |
| 10 | mouse | 105943584 | Gm45927 | predicted gene, 45927 | NM_001310017.1 | 30.6% | 28.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 1566
- ORF length:
- 1494
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catgccgcat cctcgaaggt accactcctc agagcgaggc agccggggga 121 gttaccgtga acactatcgg agccgaaagc ataagcgacg aagaagtcgc tcctggtcaa 181 gtagtagtga ccggacacga cggcgtcggc gagaggacag ctaccatgtc cgttctcgaa 241 gcagttatga tgatcgttcg tccgaccgga gggtgtatga ccggcgatac tgtggcagct 301 acagacgcaa cgattatagc cgggatcggg gagatgccta ctatgacaca gactatcggc 361 attcctatga atatcagcgg gagaacagca gttaccgcag ccagcgcagc agccggagga 421 agcacagacg gcggaggagg cgcagccgga catttagccg ctcatcttcg cacagcagcc 481 ggagagccaa gagtgtagag gacgacgctg agggccacct catctaccac gtcggggact 541 ggctacaaga gcgatatgaa atcgttagca ccttaggaga ggggaccttc ggccgagttg 601 tacaatgtgt tgaccatcgc aggggtgggg ctcgagttgc cctgaagatc attaagaatg 661 tggagaagta caaggaagca gctcgacttg agatcaacgt gctagagaaa atcaatgaga 721 aagaccctga caacaagaac ctctgtgtcc agatgtttga ctggtttgac taccatggcc 781 acatgtgtat ctcctttgag cttctgggcc ttagcacctt cgatttcctc aaagacaaca 841 actacctgcc ctaccccatc caccaagtgc gccacatggc cttccagctg tgccaggctg 901 tcaagttcct ccatgataac aagctgacac atacagacct caagcctgaa aatattctgt 961 ttgtgaattc agactatgag ctcacctaca acctagagaa gaagcgagat gagcgcagtg 1021 tgaagagcac agctgtgcgg gtggtagact ttggcagtgc cacctttgac catgagcacc 1081 atagcaccat tgtctccact cgccattacc gagcaccaga agtcatcctt gagttgggct 1141 ggtcacagcc ttgtgatgtg tggagtatag gctgcatcat ctttgaatac tatgtgggat 1201 tcaccctctt ccagacccat gacaacagag agcatctagc catgatggaa aggatcttgg 1261 gtcctatccc TTCCCGGATG ATCCGAAAGA CAAGAAAGCA GAAATATTTT TACCGGGGTC 1321 GCCTGGATTG GGATGAGAAC ACATCAGCTG GGCGCTATGT TCGTGAGAAC TGCAAACCGC 1381 TGCGGCGGTA TCTGACCTCA GAGGCAGAGG AACACCACCA GCTCTTCGAT CTGATTGAAA 1441 GCATGCTAGA GTATGAACCA GCTAAGCGGC TGACCTTGGG TGAAGCCCTT CAGCATCCTT 1501 TCTTCGCCCG CCTTCGGGCT GAGCCGCCCA ACAAGTTGTG GGACTCCAGT CGGGATATCA 1561 GTCGGTAGAA CCCAGCTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC 1621 CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA 1681 TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGATTGGAC ACTTTAGTTC TCCCGCAAAC 1741 GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt