Construct: ORF TRCN0000487860

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF021456.1_s317c1
DNA Barcode:
GGAGTTCCGCCTCCTAGATCTGGT
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
NR1I3 (9970)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000487860
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9970 NR1I3 nuclear receptor subfamily ... NM_001077480.3 99.1% 100% 540C>T;1056_1057insTGAAAGCT
2 human 9970 NR1I3 nuclear receptor subfamily ... NM_005122.5 98% 98.8% 540C>T;693_694insGTATCTCCCACA;1044_1045insTGAAAGCT
3 human 9970 NR1I3 nuclear receptor subfamily ... NM_001077482.2 97.7% 98.5% 540C>T;823_837del;1071_1072insTGAAAGCT
4 human 9970 NR1I3 nuclear receptor subfamily ... XM_005245697.4 96.6% 97.4% (many diffs)
5 human 9970 NR1I3 nuclear receptor subfamily ... NM_001077478.3 90.7% 88% (many diffs)
6 human 9970 NR1I3 nuclear receptor subfamily ... NM_001077479.3 89.6% 87.9% (many diffs)
7 human 9970 NR1I3 nuclear receptor subfamily ... NM_001077472.3 88.4% 86.7% (many diffs)
8 human 9970 NR1I3 nuclear receptor subfamily ... NM_001077469.3 88.3% 85.7% (many diffs)
9 human 9970 NR1I3 nuclear receptor subfamily ... NM_001077481.3 88.3% 88% (many diffs)
10 human 9970 NR1I3 nuclear receptor subfamily ... NM_001077471.3 87% 87.7% 540C>T;692_693ins129;927_928insTGAAAGCT
11 human 9970 NR1I3 nuclear receptor subfamily ... NM_001077477.3 81.3% 76.3% (many diffs)
12 human 9970 NR1I3 nuclear receptor subfamily ... NM_001077473.3 81.3% 76.3% (many diffs)
13 human 9970 NR1I3 nuclear receptor subfamily ... NM_001077476.3 80.2% 75.2% (many diffs)
14 human 9970 NR1I3 nuclear receptor subfamily ... NM_001077474.3 78.7% 76% (many diffs)
15 human 9970 NR1I3 nuclear receptor subfamily ... NM_001077470.3 78.6% 76.9% (many diffs)
16 human 9970 NR1I3 nuclear receptor subfamily ... XM_005245694.5 77.2% 75.4% (many diffs)
17 human 9970 NR1I3 nuclear receptor subfamily ... XM_005245693.4 76.3% 74.5% (many diffs)
18 human 9970 NR1I3 nuclear receptor subfamily ... NM_001077475.3 70.5% 65.5% (many diffs)
19 human 9970 NR1I3 nuclear receptor subfamily ... XM_011510237.3 68.4% 65.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1122
ORF length:
1056
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaagaat
61tcaccatggc cagtagggaa gatgagctga ggaactgtgt ggtatgtggg gaccaagcca
121caggctacca ctttaatgcg ctgacttgtg agggctgcaa gggtttcttc aggagaacag
181tcagcaaaag cattggtccc acctgcccct ttgctggaag ctgtgaagtc agcaagactc
241agaggcgcca ctgcccagcc tgcaggttgc agaagtgctt agatgctggc atgaggaaag
301acatgatact gtcggcagaa gccctggcat tgcggcgagc aaagcaggcc cagcggcggg
361cacagcaaac acctgtgcaa ctgagtaagg agcaagaaga gctgatccgg acactcctgg
421gggcccacac ccgccacatg ggcaccatgt ttgaacagtt tgtgcagttt aggcctccag
481ctcatctgtt catccatcac cagcccttgc ccaccctggc ccctgtgctg cctctggtca
541cacacttcgc agacatcaac actttcatgg tactgcaagt catcaagttt actaaggacc
601tgcctgtctt ccgttccctg cccattgaag accagatctc ccttctcaag ggagcagctg
661tggaaatctg tcacatcgta ctcaatacca ctttctgtct ccaaacacaa aacttcctct
721gcgggcctct tcgctacaca attgaagatg gagcccgtgt atctcccaca gtggggttcc
781aggtagagtt tttGGAGTTG CTCTTTCACT TCCATGGAAC ACTACGAAAA CTGCAGCTCC
841AAGAGCCTGA GTATGTGCTC TTGGCTGCCA TGGCCCTCTT CTCTCCTGAC CGACCTGGAG
901TTACCCAGAG AGATGAGATT GATCAGCTGC AAGAGGAGAT GGCACTGACT CTGCAAAGCT
961ACATCAAGGG CCAGCAGCGA AGGCCCCGGG ATCGGTTTCT GTATGCGAAG TTGCTAGGCC
1021TGCTGGCTGA GCTCCGGAGC ATTAATGAGG CCTACGGGTA CCAAATCCAG CACATCCAGG
1081GCCTGTCTGC CATGATGCCG CTGCTCCAGG AGATCTGCAG CTGAAAGCTT GACCCAGCTT
1141TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
1201CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
1261CTTGTGGAAA GGACGAGGAG TTCCGCCTCC TAGATCTGGT ACGCGTTAAG TCgacaatca
1321acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)

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