Construct: ORF TRCN0000487920
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF021126.1_s317c1
- DNA Barcode:
- ACCCCGGGATCTATTAACCTAATA
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- SSTR5 (6755)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000487920
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6755 | SSTR5 | somatostatin receptor 5 | NM_001053.4 | 99.9% | 100% | 1044A>G |
| 2 | human | 6755 | SSTR5 | somatostatin receptor 5 | NM_001172560.1 | 99.9% | 100% | 1044A>G |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 1164
- ORF length:
- 1092
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catggagccc ctgttcccag cctccacgcc cagctggaac gcctcctccc 121 cgggggctgc ctctggaggc ggtgacaaca ggacgctggt ggggccggcg ccctcggcag 181 gggcccgggc ggtgctggtg cccgtgctgt acctgctggt gtgtgcggcc gggctgggcg 241 ggaacacgct ggtcatctac gtggtgctgc gcttcgccaa gatgaagacc gtcaccaaca 301 tctacattct caacctggca gtggccgacg tcctgtacat gctggggctg cctttcctgg 361 ccacgcagaa cgccgcgtcc ttctggccct tcggccccgt cctgtgccgc ctggtcatga 421 cgctggacgg cgtcaaccag ttcaccagtg tcttctgcct gacagtcatg agcgtggacc 481 gctacctggc agtggtgcac ccgctgagct cggcccgctg gcgccgcccg cgtgtggcca 541 agctggcgag cgccgcggcc tgggtcctgt ctctgtgcat gtcgctgccg ctcctggtgt 601 tcgcggacgt gcaggagggc ggtacctgca acgccagctg gccggagccc gtggggctgt 661 ggggcgccgt cttcatcatc tacacggccg tgctgggctt cttcgcgccg ctgctggtca 721 tctgcctgtg ctacctgctc atcgtggtga aggtgagggc ggcgggcgtg cgcgtgggct 781 gcgtgcggcg gcgctcggag cggaaggtga cgcgcatggt gttggtggtg gtgctggtgt 841 tTGCGGGATG TTGGCTGCCC TTCTTCACCG TCAACATCGT CAACCTGGCC GTGGCGCTGC 901 CCCAGGAGCC CGCCTCCGCC GGCCTCTACT TCTTCGTGGT CATCCTCTCC TACGCCAACA 961 GCTGTGCCAA CCCCGTCCTC TACGGCTTCC TCTCTGACAA CTTCCGCCAG AGCTTCCAGA 1021 AGGTTCTGTG CCTCCGCAAG GGCTCTGGTG CCAAGGACGC TGACGCCACG GAGCCGCGTC 1081 CAGACAGGAT CCGGCAGCAG CAGGAGGCCA CGCCGCCCGC GCACCGCGCC GCAGCCAACG 1141 GGCTTATGCA GACCAGCAAG CTGTGAGACC CAGCTTTCTT GTACAAAGTG GTTGATATCG 1201 GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT 1261 AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GAACCCCGGG 1321 ATCTATTAAC CTAATAACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga 1381 aagatt