Construct: ORF TRCN0000488131
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF019310.1_s317c1
- DNA Barcode:
- AGTGAAGCATTGTACCTTACTTAT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CYSLTR2 (57105)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000488131
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57105 | CYSLTR2 | cysteinyl leukotriene recep... | NM_001308465.3 | 95.1% | 95.3% | 1_48del;1037_1038delTA |
| 2 | human | 57105 | CYSLTR2 | cysteinyl leukotriene recep... | NM_001308467.3 | 95.1% | 95.3% | 1_48del;1037_1038delTA |
| 3 | human | 57105 | CYSLTR2 | cysteinyl leukotriene recep... | NM_001308468.3 | 95.1% | 95.3% | 1_48del;1037_1038delTA |
| 4 | human | 57105 | CYSLTR2 | cysteinyl leukotriene recep... | NM_001308469.3 | 95.1% | 95.3% | 1_48del;1037_1038delTA |
| 5 | human | 57105 | CYSLTR2 | cysteinyl leukotriene recep... | NM_001308470.3 | 95.1% | 95.3% | 1_48del;1037_1038delTA |
| 6 | human | 57105 | CYSLTR2 | cysteinyl leukotriene recep... | NM_001308471.3 | 95.1% | 95.3% | 1_48del;1037_1038delTA |
| 7 | human | 57105 | CYSLTR2 | cysteinyl leukotriene recep... | NM_001308476.3 | 95.1% | 95.3% | 1_48del;1037_1038delTA |
| 8 | human | 57105 | CYSLTR2 | cysteinyl leukotriene recep... | NM_020377.5 | 95.1% | 95.3% | 1_48del;1037_1038delTA |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 75
- ORF end:
- 1065
- ORF length:
- 990
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcgc caccatggaa ccaaatggca ccttcagcaa taacaacagc aggaactgca 121 caattgaaaa cttcaagaga gaatttttcc caattgtata tctgataata tttttctggg 181 gagtcttggg aaatgggttg tccatatatg ttttcctgca gccttataag aagtccacat 241 ctgtgaacgt tttcatgcta aatctggcca tttcagatct cctgttcata agcacgcttc 301 ccttcagggc tgactattat cttagaggct ccaattggat atttggagac ctggcctgca 361 ggattatgtc ttattccttg tatgtcaaca tgtacagcag tatttatttc ctgaccgtgc 421 tgagtgttgt gcgtttcctg gcaatggttc acccctttcg gcttctgcat gtcaccagca 481 tcaggagtgc ctggatcctc tgtgggatca tatggatcct tatcatggct tcctcaataa 541 tgctcctgga cagtggctct gagcagaacg gcagtgtcac atcatgctta gagctgaatc 601 tctataaaat tgctaagctg cagaccatga actatattgc cttggtggtg ggctgcctgc 661 tgccattttt cacactcagc atctgttatc tgctgatcat tcgggttctg ttaaaagtgg 721 aggtcccaga atcggggctg cgggtttctc acaggaaggc actgaccaCC ATCATCATCA 781 CCTTGATCAT CTTCTTCTTG TGTTTCCTGC CCTATCACAC ACTGAGGACC GTCCACTTGA 841 CGACATGGAA AGTGGGTTTA TGCAAAGACA GACTGCATAA AGCTTTGGTT ATCACACTGG 901 CCTTGGCAGC AGCCAATGCC TGCTTCAATC CTCTGCTCTA TTACTTTGCT GGGGAGAATT 961 TTAAGGACAG ACTAAAGTCT GCACTCAGAA AAGGCCATCC ACAGAAGGCA AAGACAAAGT 1021 GTGTTTTCCC TGTTAGTGTG TGGTTGAGAA AGGAAACAAG AGTAGACCCA GCTTTCTTGT 1081 ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT 1141 AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG 1201 GAAAGGACGA AGTGAAGCAT TGTACCTTAC TTATACGCGT TAAGTCgaca atcaacctct 1261 ggattacaaa atttgtgaaa gatt