Construct: ORF TRCN0000488170
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF021551.1_s317c1
- DNA Barcode:
- AAGGTGCCAACGACCAACTGTTTA
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- RORC (6097)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000488170
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6097 | RORC | RAR related orphan receptor C | NM_005060.4 | 100% | 100% | |
| 2 | human | 6097 | RORC | RAR related orphan receptor C | NM_001001523.2 | 95.8% | 95.3% | 1_1delAins50;3_4insCAA;7_8insGACCCACACCT |
| 3 | human | 6097 | RORC | RAR related orphan receptor C | XM_006711484.4 | 79.5% | 77.7% | 1_194del;233_437del |
| 4 | mouse | 19885 | Rorc | RAR-related orphan receptor... | NM_011281.3 | 87% | 88.9% | (many diffs) |
| 5 | mouse | 19885 | Rorc | RAR-related orphan receptor... | NM_001293734.1 | 83.2% | 84.7% | (many diffs) |
| 6 | mouse | 19885 | Rorc | RAR-related orphan receptor... | XM_006501163.2 | 57.5% | 51.8% | (many diffs) |
| 7 | mouse | 19885 | Rorc | RAR-related orphan receptor... | XM_006501164.3 | 54% | 52.5% | (many diffs) |
| 8 | mouse | 19885 | Rorc | RAR-related orphan receptor... | NR_121656.1 | 41.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 1626
- ORF length:
- 1554
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catggacagg gccccacaga gacagcaccg agcctcacgg gagctgctgg 121 ctgcaaagaa gacccacacc tcacaaattg aagtgatccc ttgcaaaatc tgtggggaca 181 agtcgtctgg gatccactac ggggttatca cctgtgaggg gtgcaagggc ttcttccgcc 241 ggagccagcg ctgtaacgcg gcctactcct gcacccgtca gcagaactgc cccatcgacc 301 gcaccagccg aaaccgatgc cagcactgcc gcctgcagaa atgcctggcg ctgggcatgt 361 cccgagatgc tgtcaagttc ggccgcatgt ccaagaagca gagggacagc ctgcatgcag 421 aagtgcagaa acagctgcag cagcggcaac agcagcaaca ggaaccagtg gtcaagaccc 481 ctccagcagg ggcccaagga gcagataccc tcacctacac cttggggctc ccagacgggc 541 agctgcccct gggctcctcg cctgacctgc ctgaggcttc tgcctgtccc cctggcctcc 601 tgaaagcctc aggctctggg ccctcatatt ccaacaactt ggccaaggca gggctcaatg 661 gggcctcatg ccaccttgaa tacagccctg agcggggcaa ggctgagggc agagagagct 721 tctatagcac aggcagccag ctgacccctg accgatgtgg acttcgtttt gaggaacaca 781 ggcatcctgg gcttggggaa ctgggacagg gcccagacag ctacggcagc cccagtttcc 841 gcagcacacc ggaggcaccc tatgcctccc tgacagagat agagcacctg gtgcagagcg 901 tctgcaagtc ctacagggag acatgccagc tgcggctgga ggacctgctg cggcagcgct 961 ccaacatctt ctcccgggag gaagtgactg gctaccagag gaagtccatg tgggagatgt 1021 gggaacggtg tgcccaccac ctcaccgagg ccattcagta cgtggtggag ttcgccaaga 1081 ggctctcagg ctttatggag ctctgccaga atgaccagat tgtgcttctc aaagcaggag 1141 caatggaagt ggtgctggtt aggatgtgcc gggcctacaa tgctgacaac cgcacggtct 1201 tttttgaagg caaatacggt ggcatggagc tgttccgagc cttgggctgc agcgagctca 1261 tcagctccat ctttgacttc tcccactccc taagtgCCTT GCACTTTTCC GAGGATGAGA 1321 TTGCCCTCTA CACAGCCCTT GTTCTCATCA ATGCCCATCG GCCAGGGCTC CAAGAGAAAA 1381 GGAAAGTAGA ACAGCTGCAG TACAATCTGG AGCTGGCCTT TCATCATCAT CTCTGCAAGA 1441 CTCATCGCCA AAGCATCCTG GCAAAGCTGC CACCCAAGGG GAAGCTTCGG AGCCTGTGTA 1501 GCCAGCATGT GGAAAGGCTG CAGATCTTCC AGCACCTCCA CCCCATCGTG GTCCAAGCCG 1561 CTTTCCCTCC ACTCTACAAG GAGCTCTTCA GCACTGAAAC CGAGTCACCT GTGGGGCTGT 1621 CCAAGTAGAA CCCAGCTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC 1681 CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA 1741 TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAAAGGTG CCAACGACCA ACTGTTTAAC 1801 GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt