Construct: ORF TRCN0000488304
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF019238.1_s317c1
- DNA Barcode:
- AATATGACGAGACCCGATGATGTT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TBXA2R (6915)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000488304
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6915 | TBXA2R | thromboxane A2 receptor | NM_001060.6 | 99.8% | 99.7% | 924T>C;1029_1030insG |
| 2 | human | 6915 | TBXA2R | thromboxane A2 receptor | XM_011528214.2 | 99.8% | 99.7% | 924T>C;1029_1030insG |
| 3 | human | 6915 | TBXA2R | thromboxane A2 receptor | NM_201636.3 | 82.9% | 82.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 75
- ORF end:
- 1107
- ORF length:
- 1032
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcgc caccatgtgg cccaacggca gttccctggg gccctgtttc cggcccacaa 121 acattaccct ggaggagaga cggctgatcg cctcgccctg gttcgccgcc tccttctgcg 181 tggtgggcct ggcctccaac ctgctggccc tgagcgtgct ggcgggcgcg cggcaggggg 241 gttcgcacac gcgctcctcc ttcctcacct tcctctgcgg cctcgtcctc accgacttcc 301 tggggctgct ggtgaccggt accatcgtgg tgtcccagca cgccgcgctc ttcgagtggc 361 acgccgtgga ccctggctgc cgtctctgtc gcttcatggg cgtcgtcatg atcttcttcg 421 gcctgtcccc gctgctgctg ggggccgcca tggcctcaga gcgctacctg ggtatcaccc 481 ggcccttctc gcgcccggcg gtcgcctcgc agcgccgcgc ctgggccacc gtggggctgg 541 tgtgggcggc cgcgctggcg ctgggcctgc tgcccctgct gggcgtgggt cgctacaccg 601 tgcaataccc ggggtcctgg tgcttcctga cgctgggcgc cgagtccggg gacgtggcct 661 tcgggctgct cttctccatg ctgggcggcc tctcggtcgg gctgtccttc ctgctgaaca 721 cggtcagcgt ggccaccctg tgccacgtct accacgggca ggaggcggcc cagcagcgtc 781 cccgggactc cgaggtggag atgatggctc agctcctggg gatcatggtg gtggccagcg 841 tgtgttggct gccccTTCTG GTCTTCATCG CCCAGACAGT GCTGCGAAAC CCGCCTGCCA 901 TGAGCCCCGC CGGGCAGCTG TCCCGCACCA CGGAGAAGGA GCTGCTCATC TACTTGCGCG 961 TGGCCACCTG GAACCAGATC CTGGACCCCT GGGTGTACAT CCTGTTCCGC CGCGCCGTGC 1021 TCCGGCGTCT CCAGCCTCGC CTCAGCACCC GGCCCAGGTC GCTGTCCCTC CAGCCCCAGC 1081 TCACGCAGCG CTCCGGGCTG CAGGACCCAG CTTTCTTGTA CAAAGTGGTT GATATCGGTA 1141 AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC 1201 TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAA ATATGACGAG 1261 ACCCGATGAT GTTACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag 1321 att