Construct: ORF TRCN0000488394

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF021730.1_s317c1
DNA Barcode:
ATCCCCGTGAAACCCAGATGCTTT
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
DDR1 (780)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488394
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 780 DDR1 discoidin domain receptor t... NM_001297654.1 50.6% 4.9% 1_1352delinsC;1908T>C
2 human 780 DDR1 discoidin domain receptor t... NM_013993.2 50.6% 4.9% 1_1352delinsC;1908T>C
3 human 780 DDR1 discoidin domain receptor t... NM_001202522.1 50.3% 6.3% (many diffs)
4 human 780 DDR1 discoidin domain receptor t... NM_013994.2 50.2% 4.9% 1_1352delinsC;1908T>C;1994_2011del
5 human 780 DDR1 discoidin domain receptor t... XM_011514883.2 50.2% 4.9% 1_1352delinsC;1908T>C;1994_2011del
6 human 780 DDR1 discoidin domain receptor t... XM_011514884.1 50.2% 4.9% 1_1352delinsC;1908T>C;1994_2011del
7 human 780 DDR1 discoidin domain receptor t... XM_011514885.2 50.2% 4.9% 1_1352delinsC;1908T>C;1994_2011del
8 human 780 DDR1 discoidin domain receptor t... XM_011514886.2 50.2% 4.9% 1_1352delinsC;1908T>C;1994_2011del
9 human 780 DDR1 discoidin domain receptor t... XM_011514887.2 50.2% 4.9% 1_1352delinsC;1908T>C;1994_2011del
10 human 780 DDR1 discoidin domain receptor t... XM_017011268.2 50.2% 4.9% 1_1352delinsC;1908T>C;1994_2011del
11 human 780 DDR1 discoidin domain receptor t... XM_024446540.1 50.2% 4.9% 1_1352delinsC;1908T>C;1994_2011del
12 human 780 DDR1 discoidin domain receptor t... XM_024446541.1 50.2% 4.9% 1_1352delinsC;1908T>C;1994_2011del
13 human 780 DDR1 discoidin domain receptor t... XM_024446542.1 50.2% 4.9% 1_1352delinsC;1908T>C;1994_2011del
14 human 780 DDR1 discoidin domain receptor t... XM_006715185.2 49.6% 4.8% 1_1406delinsC;1962T>C
15 human 780 DDR1 discoidin domain receptor t... XM_011514882.2 49.3% 4.8% 1_1406delinsC;1962T>C;2048_2065del
16 human 780 DDR1 discoidin domain receptor t... NM_001297652.1 46.5% 5% 1_1352delinsC;1512_1513ins111;1797T>C
17 human 780 DDR1 discoidin domain receptor t... NM_001297653.1 46.5% 5% 1_1352delinsC;1512_1513ins111;1797T>C
18 human 780 DDR1 discoidin domain receptor t... NM_001954.4 46.5% 5% 1_1352delinsC;1512_1513ins111;1797T>C
19 human 780 DDR1 discoidin domain receptor t... XM_017011269.2 46.2% 5% (many diffs)
20 human 780 DDR1 discoidin domain receptor t... NM_001202523.1 45.6% 4.9% 1_1406delinsC;1566_1567ins111;1851T>C
21 human 780 DDR1 discoidin domain receptor t... XM_011514888.3 45.3% 4.9% (many diffs)
22 mouse 12305 Ddr1 discoidin domain receptor f... NM_001198831.1 45.3% 4.7% (many diffs)
23 mouse 12305 Ddr1 discoidin domain receptor f... NM_001198833.1 45.3% 4.7% (many diffs)
24 mouse 12305 Ddr1 discoidin domain receptor f... NM_007584.2 45.3% 4.7% (many diffs)
25 mouse 12305 Ddr1 discoidin domain receptor f... XM_006523533.1 45.3% 4.7% (many diffs)
26 mouse 12305 Ddr1 discoidin domain receptor f... XM_006523534.1 45.3% 4.7% (many diffs)
27 mouse 12305 Ddr1 discoidin domain receptor f... XM_006523535.3 45.3% 4.7% (many diffs)
28 mouse 12305 Ddr1 discoidin domain receptor f... XM_006523536.3 45.3% 4.7% (many diffs)
29 mouse 12305 Ddr1 discoidin domain receptor f... XM_006523537.1 45.3% 4.7% (many diffs)
30 mouse 12305 Ddr1 discoidin domain receptor f... XM_011246259.1 45.3% 4.7% (many diffs)
31 mouse 12305 Ddr1 discoidin domain receptor f... NM_172962.1 41.3% 5.3% (many diffs)
32 mouse 12305 Ddr1 discoidin domain receptor f... XM_006523538.3 41.3% 5.3% (many diffs)
33 mouse 12305 Ddr1 discoidin domain receptor f... XR_001782030.1 32% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
220
ORF end:
670
ORF length:
450
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggctcacg gagggtgttg gaagaggagc tgacggttca cctctctgtc cctggggaca
121ctatcctcat caacaaccgc ccaggtccta gagagccacc cccgtaccag gagccccggc
181ctcgtgggaa tccgccccac tccgctccct gtgtccccaa tggctctgcg ttgctgctct
241ccaatccagc ctaccgcctc cttctggcca cttacgcccg tccccctcga ggcccgggcc
301cccccacacc cgcctgggcc aaacccacca acacccaggc ctacagtggg gactatatgg
361agcctgagaa gccaggcgcc ccgcttctgc ccccacctcc ccagaacagc gtcccccatt
421atgccgaggc tgacattgtt accctgcagg gcgtcaccgg gggcaacacc tatgctgtgc
481ctgcactgcc cccaggggca gtcggggatg ggccccccag agtggatttc cctcgatctc
541gactccgctt caaggagaag cttggcgagg gccagtttgg ggaggtgcac ctgtgtgagg
601tcgacagccc tcaagatctg gtcagtcttg atttccccct taatgtgcgt aagggacacc
661ctttgctggt agctgtcaag atcttacggc cagatgccac caagaatgcc aggaatgatt
721tcctgaaaga ggtgaagatc atgtcgaggc tcaaggaccc aaacatcatt cggctgctgg
781gcgtgtgtgt gcaggacgac cccctctgca tgattactga ctacatggag aacggcgacc
841tcaaccagtt cctcagtgcc caccagctgg aggacaaggc agccgagggg gcccctgggg
901acgggcaggc tgcgcagggg cccaccatca gctacccaat gctgctgcat gtggcagccc
961agatcgcctc cggcatgcgc tatctggcca cactcaactt tgtacatcgg gacctggcca
1021cgcggaactg cctagttggg gaaaatttca ccatcaaaat cgcagacttt ggcatgagcc
1081ggaacctcta tgctggggac tattaccgtg tgcagggCCG GGCAGTGCTG CCCATCCGCT
1141GGATGGCCTG GGAGTGCATC CTCATGGGGA AGTTCACGAC TGCGAGTGAC GTGTGGGCCT
1201TTGGTGTGAC CCTGTGGGAG GTGCTGATGC TCTGTAGGGC CCAGCCCTTT GGGCAGCTCA
1261CCGACGAGCA GGTCATCGAG AACGCGGGGG AGTTCTTCCG GGACCAGGGC CGGCAGGTGT
1321ACCTGTCCCG GCCGCCTGCC TGCCCGCAGG GCCTATATGA GCTGATGCTT CGGTGCTGGA
1381GCCGGGAGTC TGAGCAGCGA CCACCCTTTT CCCAGCTGCA TCGGTTCCTG GCAGAGGATG
1441CACTCAACAC GGTGTGAGAC CCAGCTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA
1501TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA
1561GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGAATCCCCG TGAAACCCAG
1621ATGCTTTACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)