Construct: ORF TRCN0000488541
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF019198.1_s317c1
- DNA Barcode:
- CCATCGTCGATGGAGCCTAGGGCA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SSTR5 (6755)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000488541
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6755 | SSTR5 | somatostatin receptor 5 | NM_001053.4 | 99.8% | 99.7% | 1044A>G;1092_1093insG |
| 2 | human | 6755 | SSTR5 | somatostatin receptor 5 | NM_001172560.1 | 99.8% | 99.7% | 1044A>G;1092_1093insG |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 75
- ORF end:
- 1170
- ORF length:
- 1095
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcgc caccatggag cccctgttcc cagcctccac gcccagctgg aacgcctcct 121 ccccgggggc tgcctctgga ggcggtgaca acaggacgct ggtggggccg gcgccctcgg 181 caggggcccg ggcggtgctg gtgcccgtgc tgtacctgct ggtgtgtgcg gccgggctgg 241 gcgggaacac gctggtcatc tacgtggtgc tgcgcttcgc caagatgaag accgtcacca 301 acatctacat tctcaacctg gcagtggccg acgtcctgta catgctgggg ctgcctttcc 361 tggccacgca gaacgccgcg tccttctggc ccttcggccc cgtcctgtgc cgcctggtca 421 tgacgctgga cggcgtcaac cagttcacca gtgtcttctg cctgacagtc atgagcgtgg 481 accgctacct ggcagtggtg cacccgctga gctcggcccg ctggcgccgc ccgcgtgtgg 541 ccaagctggc gagcgccgcg gcctgggtcc tgtctctgtg catgtcgctg ccgctcctgg 601 tgttcgcgga cgtgcaggag ggcggtacct gcaacgccag ctggccggag cccgtggggc 661 tgtggggcgc cgtcttcatc atctacacgg ccgtgctggg cttcttcgcg ccgctgctgg 721 tcatctgcct gtgctacctg ctcatcgtgg tgaaggtgag ggcggcgggc gtgcgcgtgg 781 gctgcgtgcg gcggcgctcg gagcggaagg tgacgcgcat ggtgttggtg gtggtgctgg 841 tgtttgcggg atgttggctg cccTTCTTCA CCGTCAACAT CGTCAACCTG GCCGTGGCGC 901 TGCCCCAGGA GCCCGCCTCC GCCGGCCTCT ACTTCTTCGT GGTCATCCTC TCCTACGCCA 961 ACAGCTGTGC CAACCCCGTC CTCTACGGCT TCCTCTCTGA CAACTTCCGC CAGAGCTTCC 1021 AGAAGGTTCT GTGCCTCCGC AAGGGCTCTG GTGCCAAGGA CGCTGACGCC ACGGAGCCGC 1081 GTCCAGACAG GATCCGGCAG CAGCAGGAGG CCACGCCGCC CGCGCACCGC GCCGCAGCCA 1141 ACGGGCTTAT GCAGACCAGC AAGCTGGACC CAGCTTTCTT GTACAAAGTG GTTGATATCG 1201 GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT 1261 AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GACCATCGTC 1321 GATGGAGCCT AGGGCAACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga 1381 aagatt