Construct: ORF TRCN0000488666

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF021954.1_s317c1
DNA Barcode:
GTTCTATAACAGGGCACCACCCTG
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
NOTCH2 (4853)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488666
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4853 NOTCH2 notch receptor 2 NM_024408.4 100% 100%
2 human 4853 NOTCH2 notch receptor 2 NM_001200001.1 49.7% 49.4% (many diffs)
3 human 101929796 NOTCH2NLR notch 2 N-terminal like R NR_157049.1 10.9% (many diffs)
4 human 100996763 NOTCH2NLB notch 2 N-terminal like B NM_001364007.2 10.6% 10.1% (many diffs)
5 human 100996717 NOTCH2NLC notch 2 N-terminal like C NM_001364013.1 10.4% 9.4% (many diffs)
6 human 100996763 NOTCH2NLB notch 2 N-terminal like B XM_006711700.4 10.2% 9.1% (many diffs)
7 human 100996763 NOTCH2NLB notch 2 N-terminal like B XM_011510256.2 10.1% 9.6% (many diffs)
8 human 100996763 NOTCH2NLB notch 2 N-terminal like B XM_024452030.1 10% 9.5% (many diffs)
9 human 100996763 NOTCH2NLB notch 2 N-terminal like B XM_024452031.1 10% 9.5% (many diffs)
10 human 100996763 NOTCH2NLB notch 2 N-terminal like B XM_024452032.1 10% 9.5% (many diffs)
11 human 100996763 NOTCH2NLB notch 2 N-terminal like B XM_024452035.1 10% 9.5% (many diffs)
12 human 388677 NOTCH2NLA notch 2 N-terminal like A NM_001364006.1 9.6% 9.1% (many diffs)
13 human 100996763 NOTCH2NLB notch 2 N-terminal like B NM_001364008.1 9.6% 9.1% (many diffs)
14 human 100996717 NOTCH2NLC notch 2 N-terminal like C NM_001364012.2 9.1% 8.6% (many diffs)
15 human 388677 NOTCH2NLA notch 2 N-terminal like A NM_203458.4 9.1% 8.6% (many diffs)
16 mouse 18129 Notch2 notch 2 NM_010928.2 87% 92.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
7482
ORF length:
7413
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcaccat gcccgccctg cgccccgctc tgctgtgggc gctgctggcg ctctggctgt
121gctgcgcggc ccccgcgcat gcattgcagt gtcgagatgg ctatgaaccc tgtgtaaatg
181aaggaatgtg tgttacctac cacaatggca caggatactg caaatgtcca gaaggcttct
241tgggggaata ttgtcaacat cgagacccct gtgagaagaa ccgctgccag aatggtggga
301cttgtgtggc ccaggccatg ctggggaaag ccacgtgccg atgtgcctca gggtttacag
361gagaggactg ccagtactca acatctcatc catgctttgt gtctcgaccc tgcctgaatg
421gcggcacatg ccatatgctc agccgggata cctatgagtg cacctgtcaa gtcgggttta
481caggtaagga gtgccaatgg acggatgcct gcctgtctca tccctgtgca aatggaagta
541cctgtaccac tgtggccaac cagttctcct gcaaatgcct cacaggcttc acagggcaga
601aatgtgagac tgatgtcaat gagtgtgaca ttccaggaca ctgccagcat ggtggcacct
661gcctcaacct gcctggttcc taccagtgcc agtgccctca gggcttcaca ggccagtact
721gtgacagcct gtatgtgccc tgtgcaccct caccttgtgt caatggaggc acctgtcggc
781agactggtga cttcactttt gagtgcaact gccttccagg ttttgaaggg agcacctgtg
841agaggaatat tgatgactgc cctaaccaca ggtgtcagaa tggaggggtt tgtgtggatg
901gggtcaacac ttacaactgc cgctgtcccc cacaatggac aggacagttc tgcacagagg
961atgtggatga atgcctgctg cagcccaatg cctgtcaaaa tgggggcacc tgtgccaacc
1021gcaatggagg ctatggctgt gtatgtgtca acggctggag tggagatgac tgcagtgaga
1081acattgatga ttgtgccttc gcctcctgta ctccaggctc cacctgcatc gaccgtgtgg
1141cctccttctc ttgcatgtgc ccagagggga aggcaggtct cctgtgtcat ctggatgatg
1201catgcatcag caatccttgc cacaaggggg cactgtgtga caccaacccc ctaaatgggc
1261aatatatttg cacctgccca caaggctaca aaggggctga ctgcacagaa gatgtggatg
1321aatgtgccat ggccaatagc aatccttgtg agcatgcagg aaaatgtgtg aacacggatg
1381gcgccttcca ctgtgagtgt ctgaagggtt atgcaggacc tcgttgtgag atggacatca
1441atgagtgcca ttcagacccc tgccagaatg atgctacctg tctggataag attggaggct
1501tcacatgtct gtgcatgcca ggtttcaaag gtgtgcattg tgaattagaa ataaatgaat
1561gtcagagcaa cccttgtgtg aacaatgggc agtgtgtgga taaagtcaat cgtttccagt
1621gcctgtgtcc tcctggtttc actgggccag tttgccagat tgatattgat gactgttcca
1681gtactccgtg tctgaatggg gcaaagtgta tcgatcaccc gaatggctat gaatgccagt
1741gtgccacagg tttcactggt gtgttgtgtg aggagaacat tgacaactgt gaccccgatc
1801cttgccacca tggtcagtgt caggatggta ttgattccta cacctgcatc tgcaatcccg
1861ggtacatggg cgccatctgc agtgaccaga ttgatgaatg ttacagcagc ccttgcctga
1921acgatggtcg ctgcattgac ctggtcaatg gctaccagtg caactgccag ccaggcacgt
1981caggggttaa ttgtgaaatt aattttgatg actgtgcaag taacccttgt atccatggaa
2041tctgtatgga tggcattaat cgctacagtt gtgtctgctc accaggattc acagggcaga
2101gatgtaacat tgacattgat gagtgtgcct ccaatccctg tcgcaagggt gcaacatgta
2161tcaacggtgt gaatggtttc cgctgtatat gccccgaggg accccatcac cccagctgct
2221actcacaggt gaacgaatgc ctgagcaatc cctgcatcca tggaaactgt actggaggtc
2281tcagtggata taagtgtctc tgtgatgcag gctgggttgg catcaactgt gaagtggaca
2341aaaatgaatg cctttcgaat ccatgccaga atggaggaac ttgtgacaat ctggtgaatg
2401gatacaggtg tacttgcaag aagggcttta aaggctataa ctgccaggtg aatattgatg
2461aatgtgcctc aaatccatgc ctgaaccaag gaacctgctt tgatgacata agtggctaca
2521cttgccactg tgtgctgcca tacacaggca agaattgtca gacagtattg gctccctgtt
2581ccccaaaccc ttgtgagaat gctgctgttt gcaaagagtc accaaatttt gagagttata
2641cttgcttgtg tgctcctggc tggcaaggtc agcggtgtac cattgacatt gacgagtgta
2701tctccaagcc ctgcatgaac catggtctct gccataacac ccagggcagc tacatgtgtg
2761aatgtccacc aggcttcagt ggtatggact gtgaggagga cattgatgac tgccttgcca
2821atccttgcca gaatggaggt tcctgtatgg atggagtgaa tactttctcc tgcctctgcc
2881ttccgggttt cactggggat aagtgccaga cagacatgaa tgagtgtctg agtgaaccct
2941gtaagaatgg agggacctgc tctgactacg tcaacagtta cacttgcaag tgccaggcag
3001gatttgatgg agtccattgt gagaacaaca tcaatgagtg cactgagagc tcctgtttca
3061atggtggcac atgtgttgat gggattaact ccttctcttg cttgtgccct gtgggtttca
3121ctggatcctt ctgcctccat gagatcaatg aatgcagctc tcatccatgc ctgaatgagg
3181gaacgtgtgt tgatggcctg ggtacctacc gctgcagctg ccccctgggc tacactggga
3241aaaactgtca gaccctggtg aatctctgca gtcggtctcc atgtaaaaac aaaggtactt
3301gcgttcagaa aaaagcagag tcccagtgcc tatgtccatc tggatgggct ggtgcctatt
3361gtgacgtgcc caatgtctct tgtgacatag cagcctccag gagaggtgtg cttgttgaac
3421acttgtgcca gcactcaggt gtctgcatca atgctggcaa cacgcattac tgtcagtgcc
3481ccctgggcta tactgggagc tactgtgagg agcaactcga tgagtgtgcg tccaacccct
3541gccagcacgg ggcaacatgc agtgacttca ttggtggata cagatgcgag tgtgtcccag
3601gctatcaggg tgtcaactgt gagtatgaag tggatgagtg ccagaatcag ccctgccaga
3661atggaggcac ctgtattgac cttgtgaacc atttcaagtg ctcttgccca ccaggcactc
3721ggggcctact ctgtgaagag aacattgatg actgtgcccg gggtccccat tgccttaatg
3781gtggtcagtg catggatagg attggaggct acagttgtcg ctgcttgcct ggctttgctg
3841gggagcgttg tgagggagac atcaacgagt gcctctccaa cccctgcagc tctgagggca
3901gcctggactg tatacagctc accaatgact acctgtgtgt ttgccgtagt gcctttactg
3961gccggcactg tgaaaccttc gtcgatgtgt gtccccagat gccctgcctg aatggaggga
4021cttgtgctgt ggccagtaac atgcctgatg gtttcatttg ccgttgtccc ccgggatttt
4081ccggggcaag gtgccagagc agctgtggac aagtgaaatg taggaagggg gagcagtgtg
4141tgcacaccgc ctctggaccc cgctgcttct gccccagtcc ccgggactgc gagtcaggct
4201gtgccagtag cccctgccag cacgggggca gctgccaccc tcagcgccag cctccttatt
4261actcctgcca gtgtgcccca ccattctcgg gtagccgctg tgaactctac acggcacccc
4321ccagcacccc tcctgccacc tgtctgagcc agtattgtgc cgacaaagct cgggatggcg
4381tctgtgatga ggcctgcaac agccatgcct gccagtggga tgggggtgac tgttctctca
4441ccatggagaa cccctgggcc aactgctcct ccccacttcc ctgctgggat tatatcaaca
4501accagtgtga tgagctgtgc aacacggtcg agtgcctgtt tgacaacttt gaatgccagg
4561ggaacagcaa gacatgcaag tatgacaaat actgtgcaga ccacttcaaa gacaaccact
4621gtgaccaggg gtgcaacagt gaggagtgtg gttgggatgg gctggactgt gctgctgacc
4681aacctgagaa cctggcagaa ggtaccctgg ttattgtggt attgatgcca cctgaacaac
4741tgctccagga tgctcgcagc ttcttgcggg cactgggtac cctgctccac accaacctgc
4801gcattaagcg ggactcccag ggggaactca tggtgtaccc ctattatggt gagaagtcag
4861ctgctatgaa gaaacagagg atgacacgca gatcccttcc tggtgaacaa gaacaggagg
4921tggctggctc taaagtcttt ctggaaattg acaaccgcca gtgtgttcaa gactcagacc
4981actgcttcaa gaacacggat gcagcagcag ctctcctggc ctctcacgcc atacagggga
5041ccctgtcata ccctcttgtg tctgtcgtca gtgaatccct gactccagaa cgcactcagc
5101tcctctatct ccttgctgtt gctgttgtca tcattctgtt tattattctg ctgggggtaa
5161tcatggcaaa acgaaagcgt aagcatggct ctctctggct gcctgaaggt ttcactcttc
5221gccgagatgc aagcaatcac aagcgtcgtg agccagtggg acaggatgct gtggggctga
5281aaaatctctc agtgcaagtc tcagaagcta acctaattgg tactggaaca agtgaacact
5341gggtcgatga tgaagggccc cagccaaaga aagtaaaggc tgaagatgag gccttactct
5401cagaagaaga tgaccccatt gatcgacggc catggacaca gcagcacctt gaagctgcag
5461acatccgtag gacaccatcg ctggctctca cccctcctca ggcagagcag gaggtggatg
5521tgttagatgt gaatgtccgt ggcccagatg gctgcacccc attgatgttg gcttctctcc
5581gaggaggcag ctcagatttg agtgatgaag atgaagatgc agaggactct tctgctaaca
5641tcatcacaga cttggtctac cagggtgcca gcctccaggc ccagacagac cggactggtg
5701agatggccct gcaccttgca gcccgctact cacgggctga tgctgccaag cgtctcctgg
5761atgcaggtgc agatgccaat gcccaggaca acatgggccg ctgtccactc catgctgcag
5821tggcagctga tgcccaaggt gtcttccaga ttctgattcg caaccgagta actgatctag
5881atgccaggat gaatgatggt actacacccc tgatcctggc tgcccgcctg gctgtggagg
5941gaatggtggc agaactgatc aactgccaag cggatgtgaa tgcagtggat gaccatggaa
6001aatctgctct tcactgggca gctgctgtca ataatgtgga ggcaactctt ttgttgttga
6061aaaatggggc caaccgagac atgcaggaca acaaggaaga gacacctctg tttcttgctg
6121cccgggaggg gagctatgaa gcagccaaga tcctgttaga ccattttgcc aatcgagaca
6181tcacagacca tatggatcgt cttccccggg atgtggctcg ggatcgcatg caccatgaca
6241ttgtgcgcct tctggatgaa tacaatgtga ccccaagccc tccaggcacc gtgttgactt
6301ctgctctctc acctgtcatc tgtgggccca acagatcttt cctcagcctg aagcacaccc
6361caatgggcaa gaagtctaga cggcccagtg ccaagagtac catgcctact agcctcccta
6421accttgccaa ggaggcaaag gatgccaagg gtagtaggag gaagaagtct ctgagtgaga
6481aggtccaact gtctgagagt tcagtaactt tatcccctgt tgattcccta gaatctcctc
6541acacgtatgt ttccgacacc acatcctctc caatgattac atcccctggg atcttacagg
6601cctcacccaa ccctatgttg gccactgccg cccctcctgc cccagtccat gcccagcatg
6661cactatcttt ttctaacctt catgaaatgc agcctttggc acatggggcc agcactgtgc
6721ttccctcagt gagccagttg ctatcccacc accacattgt gtctccaggc agtggcagtg
6781ctggaagctt gagtaggctc catccagtcc cagtcccagc agattggatg aaccgcatgg
6841aggtgaatga gacccagtac aatgagatgt ttggtatggt cctggctcca gctgagggca
6901cccatcctgg catagctccc cagagcaggc cacctgaagg gaagcacata accacccctc
6961gggagccctt gccccccatt gtgactttcc agctcatccc taaaggcagt attgcccaac
7021cagcgggggc tccccagcct cagtccacct gccctccagc tgttgcgggc cccctgccca
7081ccatgtacca gattccagaa atggcccgtt tgcccagtgt ggctttcccc actgccatga
7141tgccccagca ggacggGCAG GTAGCTCAGA CCATTCTCCC AGCCTATCAT CCTTTCCCAG
7201CCTCTGTGGG CAAGTACCCC ACACCCCCTT CACAGCACAG TTATGCTTCC TCAAATGCTG
7261CTGAGCGAAC ACCCAGTCAC AGTGGTCACC TCCAGGGTGA GCATCCCTAC CTGACACCAT
7321CCCCAGAGTC TCCTGACCAG TGGTCAAGTT CATCACCCCA CTCTGCTTCT GACTGGTCAG
7381ATGTGACCAC CAGCCCTACC CCTGGGGGTG CTGGAGGAGG TCAGCGGGGA CCTGGGACAC
7441ACATGTCTGA GCCACCACAC AACAACATGC AGGTTTATGC GTGAGACCCA GCTTTCTTGT
7501ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
7561AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
7621GAAAGGACGA GTTCTATAAC AGGGCACCAC CCTGACGCGT TAAGTCgaca atcaacctct
7681ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)

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