Construct: ORF TRCN0000488667

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF021739.1_s317c1
DNA Barcode:
GGGTCATTCGTTCACAAAACCAAG
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
NOTCH1 (4851)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488667
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4851 NOTCH1 notch receptor 1 NM_017617.5 99.9% 99.9% 2585_2586insAGC;6555C>T;6648G>A
2 human 4851 NOTCH1 notch receptor 1 XM_011518717.2 90.4% 90.3% (many diffs)
3 mouse 18128 Notch1 notch 1 NM_008714.3 85.2% 90.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
7737
ORF length:
7668
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcaccat gccgccgctc ctggcgcccc tgctctgcct ggcgctgctg cccgcgctcg
121ccgcacgagg cccgcgatgc tcccagcccg gtgagacctg cctgaatggc gggaagtgtg
181aagcggccaa tggcacggag gcctgcgtct gtggcggggc cttcgtgggc ccgcgatgcc
241aggaccccaa cccgtgcctc agcaccccct gcaagaacgc cgggacatgc cacgtggtgg
301accgcagagg cgtggcagac tatgcctgca gctgtgccct gggcttctct gggcccctct
361gcctgacacc cctggacaat gcctgcctca ccaacccctg ccgcaacggg ggcacctgcg
421acctgctcac gctgacggag tacaagtgcc gctgcccgcc cggctggtca gggaaatcgt
481gccagcaggc tgacccgtgc gcctccaacc cctgcgccaa cggtggccag tgcctgccct
541tcgaggcctc ctacatctgc cactgcccac ccagcttcca tggccccacc tgccggcagg
601atgtcaacga gtgtggccag aagcccgggc tttgccgcca cggaggcacc tgccacaacg
661aggtcggctc ctaccgctgc gtctgccgcg ccacccacac tggccccaac tgcgagcggc
721cctacgtgcc ctgcagcccc tcgccctgcc agaacggggg cacctgccgc cccacgggcg
781acgtcaccca cgagtgtgcc tgcctgccag gcttcaccgg ccagaactgt gaggaaaata
841tcgacgattg tccaggaaac aactgcaaga acgggggtgc ctgtgtggac ggcgtgaaca
901cctacaactg ccgctgcccg ccagagtgga caggtcagta ctgtaccgag gatgtggacg
961agtgccagct gatgccaaat gcctgccaga acggcgggac ctgccacaac acccacggtg
1021gctacaactg cgtgtgtgtc aacggctgga ctggtgagga ctgcagcgag aacattgatg
1081actgtgccag cgccgcctgc ttccacggcg ccacctgcca tgaccgtgtg gcctccttct
1141actgcgagtg tccccatggc cgcacaggtc tgctgtgcca cctcaacgac gcatgcatca
1201gcaacccctg taacgagggc tccaactgcg acaccaaccc tgtcaatggc aaggccatct
1261gcacctgccc ctcggggtac acgggcccgg cctgcagcca ggacgtggat gagtgctcgc
1321tgggtgccaa cccctgcgag catgcgggca agtgcatcaa cacgctgggc tccttcgagt
1381gccagtgtct gcagggctac acgggccccc gatgcgagat cgacgtcaac gagtgcgtct
1441cgaacccgtg ccagaacgac gccacctgcc tggaccagat tggggagttc cagtgcatct
1501gcatgcccgg ctacgagggt gtgcactgcg aggtcaacac agacgagtgt gccagcagcc
1561cctgcctgca caatggccgc tgcctggaca agatcaatga gttccagtgc gagtgcccca
1621cgggcttcac tgggcatctg tgccagtacg atgtggacga gtgtgccagc accccctgca
1681agaatggtgc caagtgcctg gacggaccca acacttacac ctgtgtgtgc acggaagggt
1741acacggggac gcactgcgag gtggacatcg atgagtgcga ccccgacccc tgccactacg
1801gctcctgcaa ggacggcgtc gccaccttca cctgcctctg ccgcccaggc tacacgggcc
1861accactgcga gaccaacatc aacgagtgct ccagccagcc ctgccgccac gggggcacct
1921gccaggaccg cgacaacgcc tacctctgct tctgcctgaa ggggaccaca ggacccaact
1981gcgagatcaa cctggatgac tgtgccagca gcccctgcga ctcgggcacc tgtctggaca
2041agatcgatgg ctacgagtgt gcctgtgagc cgggctacac agggagcatg tgtaacatca
2101acatcgatga gtgtgcgggc aacccctgcc acaacggggg cacctgcgag gacggcatca
2161atggcttcac ctgccgctgc cccgagggct accacgaccc cacctgcctg tctgaggtca
2221atgagtgcaa cagcaacccc tgcgtccacg gggcctgccg ggacagcctc aacgggtaca
2281agtgcgactg tgaccctggg tggagtggga ccaactgtga catcaacaac aatgagtgtg
2341aatccaaccc ttgtgtcaac ggcggcacct gcaaagacat gaccagtggc tacgtgtgca
2401cctgccggga gggcttcagc ggtcccaact gccagaccaa catcaacgag tgtgcgtcca
2461acccatgtct gaaccagggc acgtgtattg acgacgttgc cgggtacaag tgcaactgcc
2521tgctgcccta cacaggtgcc acgtgtgagg tggtgctggc cccgtgtgcc cccagcccct
2581gcagaaacgg cggggagtgc aggcaatccg aggactatga gagcttctcc tgtgtctgcc
2641ccacgggctg gcaagcaggg cagacctgtg aggtcgacat caacgagtgc gttctgagcc
2701cgtgccggca cggcgcatcc tgccagaaca cccacggcgg ctaccgctgc cactgccagg
2761ccggctacag tgggcgcaac tgcgagaccg acatcgacga ctgccggccc aacccgtgtc
2821acaacggggg ctcctgcaca gacggcatca acacggcctt ctgcgactgc ctgcccggct
2881tccggggcac tttctgtgag gaggacatca acgagtgtgc cagtgacccc tgccgcaacg
2941gggccaactg cacggactgc gtggacagct acacgtgcac ctgccccgca ggcttcagcg
3001ggatccactg tgagaacaac acgcctgact gcacagagag ctcctgcttc aacggtggca
3061cctgcgtgga cggcatcaac tcgttcacct gcctgtgtcc acccggcttc acgggcagct
3121actgccagca cgatgtcaat gagtgcgact cacagccctg cctgcatggc ggcacctgtc
3181aggacggctg cggctcctac aggtgcacct gcccccaggg ctacactggc cccaactgcc
3241agaaccttgt gcactggtgt gactcctcgc cctgcaagaa cggcggcaaa tgctggcaga
3301cccacaccca gtaccgctgc gagtgcccca gcggctggac cggcctttac tgcgacgtgc
3361ccagcgtgtc ctgtgaggtg gctgcgcagc gacaaggtgt tgacgttgcc cgcctgtgcc
3421agcatggagg gctctgtgtg gacgcgggca acacgcacca ctgccgctgc caggcgggct
3481acacaggcag ctactgtgag gacctggtgg acgagtgctc acccagcccc tgccagaacg
3541gggccacctg cacggactac ctgggcggct actcctgcaa gtgcgtggcc ggctaccacg
3601gggtgaactg ctctgaggag atcgacgagt gcctctccca cccctgccag aacgggggca
3661cctgcctcga cctccccaac acctacaagt gctcctgccc acggggcact cagggtgtgc
3721actgtgagat caacgtggac gactgcaatc cccccgttga ccccgtgtcc cggagcccca
3781agtgctttaa caacggcacc tgcgtggacc aggtgggcgg ctacagctgc acctgcccgc
3841cgggcttcgt gggtgagcgc tgtgaggggg atgtcaacga gtgcctgtcc aatccctgcg
3901acgcccgtgg cacccagaac tgcgtgcagc gcgtcaatga cttccactgc gagtgccgtg
3961ctggtcacac cgggcgccgc tgcgagtccg tcatcaatgg ctgcaaaggc aagccctgca
4021agaatggggg cacctgcgcc gtggcctcca acaccgcccg cgggttcatc tgcaagtgcc
4081ctgcgggctt cgagggcgcc acgtgtgaga atgacgctcg tacctgcggc agcctgcgct
4141gcctcaacgg cggcacatgc atctccggcc cgcgcagccc cacctgcctg tgcctgggcc
4201ccttcacggg ccccgaatgc cagttcccgg ccagcagccc ctgcctgggc ggcaacccct
4261gctacaacca ggggacctgt gagcccacat ccgagagccc cttctaccgt tgcctgtgcc
4321ccgccaaatt caacgggctc ttgtgccaca tcctggacta cagcttcggg ggtggggccg
4381ggcgcgacat ccccccgccg ctgatcgagg aggcgtgcga gctgcccgag tgccaggagg
4441acgcgggcaa caaggtctgc agcctgcagt gcaacaacca cgcgtgcggc tgggacggcg
4501gtgactgctc cctcaacttc aatgacccct ggaagaactg cacgcagtct ctgcagtgct
4561ggaagtactt cagtgacggc cactgtgaca gccagtgcaa ctcagccggc tgcctcttcg
4621acggctttga ctgccagcgt gcggaaggcc agtgcaaccc cctgtacgac cagtactgca
4681aggaccactt cagcgacggg cactgcgacc agggctgcaa cagcgcggag tgcgagtggg
4741acgggctgga ctgtgcggag catgtacccg agaggctggc ggccggcacg ctggtggtgg
4801tggtgctgat gccgccggag cagctgcgca acagctcctt ccacttcctg cgggagctca
4861gccgcgtgct gcacaccaac gtggtcttca agcgtgacgc acacggccag cagatgatct
4921tcccctacta cggccgcgag gaggagctgc gcaagcaccc catcaagcgt gccgccgagg
4981gctgggccgc acctgacgcc ctgctgggcc aggtgaaggc ctcgctgctc cctggtggca
5041gcgagggtgg gcggcggcgg agggagctgg accccatgga cgtccgcggc tccatcgtct
5101acctggagat tgacaaccgg cagtgtgtgc aggcctcctc gcagtgcttc cagagtgcca
5161ccgacgtggc cgcattcctg ggagcgctcg cctcgctggg cagcctcaac atcccctaca
5221agatcgaggc cgtgcagagt gagaccgtgg agccgccccc gccggcgcag ctgcacttca
5281tgtacgtggc ggcggccgcc tttgtgcttc tgttcttcgt gggctgcggg gtgctgctgt
5341cccgcaagcg ccggcggcag catggccagc tctggttccc tgagggcttc aaagtgtctg
5401aggccagcaa gaagaagcgg cgggagcccc tcggcgagga ctccgtgggc ctcaagcccc
5461tgaagaacgc ttcagacggt gccctcatgg acgacaacca gaatgagtgg ggggacgagg
5521acctggagac caagaagttc cggttcgagg agcccgtggt tctgcctgac ctggacgacc
5581agacagacca ccggcagtgg actcagcagc acctggatgc cgctgacctg cgcatgtctg
5641ccatggcccc cacaccgccc cagggtgagg ttgacgccga ctgcatggac gtcaatgtcc
5701gcgggcctga tggcttcacc ccgctcatga tcgcctcctg cagcgggggc ggcctggaga
5761cgggcaacag cgaggaagag gaggacgcgc cggccgtcat ctccgacttc atctaccagg
5821gcgccagcct gcacaaccag acagaccgca cgggcgagac cgccttgcac ctggccgccc
5881gctactcacg ctctgatgcc gccaagcgcc tgctggaggc cagcgcagat gccaacatcc
5941aggacaacat gggccgcacc ccgctgcatg cggctgtgtc tgccgacgca caaggtgtct
6001tccagatcct gatccggaac cgagccacag acctggatgc ccgcatgcat gatggcacga
6061cgccactgat cctggctgcc cgcctggccg tggagggcat gctggaggac ctcatcaact
6121cacacgccga cgtcaacgcc gtagatgacc tgggcaagtc cgccctgcac tgggccgccg
6181ccgtgaacaa tgtggatgcc gcagttgtgc tcctgaagaa cggggctaac aaagatatgc
6241agaacaacag ggaggagaca cccctgtttc tggccgcccg ggagggcagc tacgagaccg
6301ccaaggtgct gctggaccac tttgccaacc gggacatcac ggatcatatg gaccgcctgc
6361cgcgcgacat cgcacaggag cgcatgcatc acgacatcgt gaggctgctg gacgagtaca
6421acctggtgcg cagcccgcag ctgcacggag ccccgctggg gggcacgccc accctgtcgc
6481ccccgctctg ctcgcccaac ggctacctgg gcagcctcaa gcccggcgtg cagggcaaga
6541aggtccgcaa gcccagcagc aaaggcctgg cctgtggaag caaggaggcc aaggacctca
6601aggcacggag gaagaagtcc caggatggca agggctgcct gctggacagc tccggcatgc
6661tctcgcccgt ggactccctg gagtcacccc atggctacct gtcagacgtg gcctcgccac
6721cactgctgcc ctccccgttc cagcagtctc cgtccgtgcc cctcaaccac ctgcctggga
6781tgcccgacac ccacctgggc atcgggcacc tgaacgtggc ggccaagccc gagatggcgg
6841cgctgggtgg gggcggccgg ctggcctttg agactggccc acctcgtctc tcccacctgc
6901ctgtggcctc tggcaccagc accgtcctgg gctccagcag cggaggggcc ctgaatttca
6961ctgtgggcgg gtccaccagt ttgaatggtc aatgcgagtg gctgtcccgg ctgcagagcg
7021gcatggtgcc gaaccaatac aaccctctgc gggggagtgt ggcaccaggc cccctgagca
7081cacaggcccc ctccctgcag catggcatgg taggcccgct gcacagtagc cttgctgcca
7141gcgccctgtc ccagatgatg agctaccagg gcctgcccag cacccggctg gccacccagc
7201ctcacctggt gcagacccag caggtgcagc cacaaaactt acagatgcag cagcagaacc
7261tgcagccagc aaacatccag cagcagcaaa gcctgcagcc gccaccacca ccaccacagc
7321cgcaccttgg cgtgagctca gcagccagcg gccacctggg ccggagcttc ctgagtggag
7381agccgagcca ggcagacgtg cagccactgg gccccagcag cctggcggtg cacactattc
7441tgccCCAGGA GAGCCCCGCC CTGCCCACGT CGCTGCCATC CTCGCTGGTC CCACCCGTGA
7501CCGCAGCCCA GTTCCTGACG CCCCCCTCGC AGCACAGCTA CTCCTCGCCT GTGGACAACA
7561CCCCCAGCCA CCAGCTACAG GTGCCTGAGC ACCCCTTCCT CACCCCGTCC CCTGAGTCCC
7621CTGACCAGTG GTCCAGCTCG TCCCCGCATT CCAACGTCTC CGACTGGTCC GAGGGCGTCT
7681CCAGCCCTCC CACCAGCATG CAGTCCCAGA TCGCCCGCAT TCCGGAGGCC TTCAAGTAAG
7741ACCCAGCTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
7801GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
7861TTTATATATC TTGTGGAAAG GACGAGGGTC ATTCGTTCAC AAAACCAAGA CGCGTTAAGT
7921Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

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