Construct: ORF TRCN0000488764
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF019343.1_s317c1
- DNA Barcode:
- CGGGTTCTATGTGGTGATGTTCCT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC52A2 (79581)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000488764
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79581 | SLC52A2 | solute carrier family 52 me... | NM_001253815.2 | 99.9% | 99.7% | 1335_1336insG |
| 2 | human | 79581 | SLC52A2 | solute carrier family 52 me... | NM_001253816.2 | 99.9% | 99.7% | 1335_1336insG |
| 3 | human | 79581 | SLC52A2 | solute carrier family 52 me... | NM_001363118.2 | 99.9% | 99.7% | 1335_1336insG |
| 4 | human | 79581 | SLC52A2 | solute carrier family 52 me... | NM_001363120.2 | 99.9% | 99.7% | 1335_1336insG |
| 5 | human | 79581 | SLC52A2 | solute carrier family 52 me... | NM_001363121.2 | 99.9% | 99.7% | 1335_1336insG |
| 6 | human | 79581 | SLC52A2 | solute carrier family 52 me... | NM_024531.5 | 99.9% | 99.7% | 1335_1336insG |
| 7 | human | 55065 | SLC52A1 | solute carrier family 52 me... | NM_001104577.1 | 86.6% | 85.9% | (many diffs) |
| 8 | human | 55065 | SLC52A1 | solute carrier family 52 me... | NM_017986.4 | 86.6% | 85.9% | (many diffs) |
| 9 | human | 55065 | SLC52A1 | solute carrier family 52 me... | XM_011523951.2 | 86.6% | 85.9% | (many diffs) |
| 10 | human | 79581 | SLC52A2 | solute carrier family 52 me... | XM_011517300.2 | 80.1% | 80% | 0_1ins264;1071_1072insG |
| 11 | human | 79581 | SLC52A2 | solute carrier family 52 me... | NM_001363122.2 | 63% | 63% | 129_130ins492;843_844insG |
| 12 | human | 79581 | SLC52A2 | solute carrier family 52 me... | XM_017013821.1 | 63% | 63% | 129_130ins492;843_844insG |
| 13 | human | 79581 | SLC52A2 | solute carrier family 52 me... | XM_017013822.1 | 63% | 63% | 129_130ins492;843_844insG |
| 14 | human | 79581 | SLC52A2 | solute carrier family 52 me... | NR_045600.2 | 62.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 75
- ORF end:
- 1413
- ORF length:
- 1338
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcgc caccatggca gcacccacgc ccgcccgtcc ggtgctgacc cacctgctgg 121 tggctctctt cggcatgggc tcctgggctg cggtcaatgg gatctgggtg gagctacctg 181 tggtggtcaa agagcttcca gagggttgga gcctcccctc ttacgtctct gtgcttgtgg 241 ctctggggaa cctgggtctg ctggtggtga ccctctggag gaggctggcc ccaggaaagg 301 acgagcaggt ccccatccgg gtggtgcagg tgctgggcat ggtgggcaca gccctgctgg 361 cctctctgtg gcaccatgtg gccccagtgg caggacagtt gcattctgtg gccttcttag 421 cactggcctt tgtgctggca ctggcatgct gtgcctcgaa tgtcactttc ctgcccttct 481 tgagccacct gccacctcgc ttcttacggt cattcttcct gggtcaaggc ctgagtgccc 541 tgctgccctg cgtgctggcc ctagtgcagg gtgtgggccg cctcgagtgc ccgccagccc 601 ccatcaacgg cacccctggc cccccgctcg acttccttga gcgttttccc gccagcacct 661 tcttctgggc actgactgcc cttctggtcg cttcagctgc tgccttccag ggtcttctgc 721 tgctgttgcc gccaccacca tctgtaccca caggggagtt aggatcaggc ctccaggtgg 781 gagccccagg agcagaggaa gaggtggaag agtcctcacc actgcaagag ccaccaagcc 841 aggcagcagg caccacccct ggtccagacc ctaaggccta tcagcttcta tcagcccgca 901 gtgcctgcct gctgggcctg ttggccgcca ccaacgcgct gaccaatggc gtgctgcctg 961 ccgtgcagag cttttcctgc ttaccctacg ggcgtctggc ctaccacctg gctgtggtgc 1021 tgggcagtgc tgccaatccc ctggcctgct tcctggccat gggtgtgctg tgcaggtcct 1081 tGGCAGGGCT GGGCGGCCTC TCTCTGCTGG GCGTGTTCTG TGGGGGCTAC CTGATGGCGC 1141 TGGCAGTCCT GAGCCCCTGC CCGCCCCTGG TGGGCACCTC GGCGGGGGTG GTCCTCGTGG 1201 TGCTGTCGTG GGTGCTGTGT CTTGGCGTGT TCTCCTACGT GAAGGTGGCA GCCAGCTCCC 1261 TGCTGCATGG CGGGGGCCGG CCGGCATTGC TGGCAGCCGG CGTGGCCATC CAGGTGGGCT 1321 CTCTGCTCGG CGCTGTTGCT ATGTTCCCCC CGACCAGCAT CTATCACGTG TTCCACAGCA 1381 GAAAGGACTG TGCAGACCCC TGTGACTCCG ACCCAGCTTT CTTGTACAAA GTGGTTGATA 1441 TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC 1501 CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGACGGGT 1561 TCTATGTGGT GATGTTCCTA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg 1621 tgaaagatt