Construct: ORF TRCN0000488820
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF019344.1_s317c1
- DNA Barcode:
- CCCATTTGTGTACACCACAATGAG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CYSLTR2 (57105)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000488820
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57105 | CYSLTR2 | cysteinyl leukotriene recep... | NM_001308465.3 | 99.8% | 100% | 1037_1038delTA |
| 2 | human | 57105 | CYSLTR2 | cysteinyl leukotriene recep... | NM_001308467.3 | 99.8% | 100% | 1037_1038delTA |
| 3 | human | 57105 | CYSLTR2 | cysteinyl leukotriene recep... | NM_001308468.3 | 99.8% | 100% | 1037_1038delTA |
| 4 | human | 57105 | CYSLTR2 | cysteinyl leukotriene recep... | NM_001308469.3 | 99.8% | 100% | 1037_1038delTA |
| 5 | human | 57105 | CYSLTR2 | cysteinyl leukotriene recep... | NM_001308470.3 | 99.8% | 100% | 1037_1038delTA |
| 6 | human | 57105 | CYSLTR2 | cysteinyl leukotriene recep... | NM_001308471.3 | 99.8% | 100% | 1037_1038delTA |
| 7 | human | 57105 | CYSLTR2 | cysteinyl leukotriene recep... | NM_001308476.3 | 99.8% | 100% | 1037_1038delTA |
| 8 | human | 57105 | CYSLTR2 | cysteinyl leukotriene recep... | NM_020377.5 | 99.8% | 100% | 1037_1038delTA |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 75
- ORF end:
- 1113
- ORF length:
- 1038
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcgc caccatggag agaaaattta tgtccttgca accatccatc tccgtatcag 121 aaatggaacc aaatggcacc ttcagcaata acaacagcag gaactgcaca attgaaaact 181 tcaagagaga atttttccca attgtatatc tgataatatt tttctgggga gtcttgggaa 241 atgggttgtc catatatgtt ttcctgcagc cttataagaa gtccacatct gtgaacgttt 301 tcatgctaaa tctggccatt tcagatctcc tgttcataag cacgcttccc ttcagggctg 361 actattatct tagaggctcc aattggatat ttggagacct ggcctgcagg attatgtctt 421 attccttgta tgtcaacatg tacagcagta tttatttcct gaccgtgctg agtgttgtgc 481 gtttcctggc aatggttcac ccctttcggc ttctgcatgt caccagcatc aggagtgcct 541 ggatcctctg tgggatcata tggatcctta tcatggcttc ctcaataatg ctcctggaca 601 gtggctctga gcagaacggc agtgtcacat catgcttaga gctgaatctc tataaaattg 661 ctaagctgca gaccatgaac tatattgcct tggtggtggg ctgcctgctg ccatttttca 721 cactcagcat ctgttatctg ctgatcattc gggttctgtt aaaagtggag gtcccagaat 781 cggggcTGCG GGTTTCTCAC AGGAAGGCAC TGACCACCAT CATCATCACC TTGATCATCT 841 TCTTCTTGTG TTTCCTGCCC TATCACACAC TGAGGACCGT CCACTTGACG ACATGGAAAG 901 TGGGTTTATG CAAAGACAGA CTGCATAAAG CTTTGGTTAT CACACTGGCC TTGGCAGCAG 961 CCAATGCCTG CTTCAATCCT CTGCTCTATT ACTTTGCTGG GGAGAATTTT AAGGACAGAC 1021 TAAAGTCTGC ACTCAGAAAA GGCCATCCAC AGAAGGCAAA GACAAAGTGT GTTTTCCCTG 1081 TTAGTGTGTG GTTGAGAAAG GAAACAAGAG TAGACCCAGC TTTCTTGTAC AAAGTGGTTG 1141 ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA 1201 GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGACC 1261 CATTTGTGTA CACCACAATG AGACGCGTTA AGTCgacaat caacctctgg attacaaaat 1321 ttgtgaaaga tt