Construct: ORF TRCN0000488838

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF020626.1_s317c1
DNA Barcode:
TAATATCATACATGAAACAATGTT
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
SRC (6714)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488838
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6714 SRC SRC proto-oncogene, non-rec... NM_005417.4 99.8% 99.8% 48C>T;1589A>T
2 human 6714 SRC SRC proto-oncogene, non-rec... NM_198291.2 99.8% 99.8% 48C>T;1589A>T
3 human 6714 SRC SRC proto-oncogene, non-rec... XM_011529013.2 99.8% 99.8% 48C>T;1218G>C;1589A>T
4 human 6714 SRC SRC proto-oncogene, non-rec... XM_017028024.1 98.7% 98.7% (many diffs)
5 human 6714 SRC SRC proto-oncogene, non-rec... XM_017028025.1 98.7% 98.7% (many diffs)
6 human 6714 SRC SRC proto-oncogene, non-rec... XM_017028026.1 98.7% 98.7% (many diffs)
7 human 6714 SRC SRC proto-oncogene, non-rec... XM_017028027.2 98.7% 98.7% (many diffs)
8 mouse 20779 Src Rous sarcoma oncogene NM_001025395.2 89.9% 98.6% (many diffs)
9 mouse 20779 Src Rous sarcoma oncogene NM_009271.3 88.9% 97.6% (many diffs)
10 mouse 20779 Src Rous sarcoma oncogene XM_006499063.3 87.1% 95.6% (many diffs)
11 mouse 20779 Src Rous sarcoma oncogene XM_006499065.3 87.1% 95.6% (many diffs)
12 mouse 20779 Src Rous sarcoma oncogene XM_006499066.2 87.1% 95.6% (many diffs)
13 mouse 20779 Src Rous sarcoma oncogene XM_011239402.2 87.1% 95.6% (many diffs)
14 mouse 20779 Src Rous sarcoma oncogene XM_011239403.2 87.1% 95.6% (many diffs)
15 mouse 20779 Src Rous sarcoma oncogene XM_011239404.1 87.1% 95.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
72
ORF end:
1680
ORF length:
1608
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcac catgggtagc aacaagagca agcccaagga tgccagccag cggcgccgta
121gcctggagcc cgccgagaac gtgcacggcg ctggcggggg cgctttcccc gcctcgcaga
181cccccagcaa gccagcctcg gccgacggcc accgcggccc cagcgcggcc ttcgcccccg
241cggccgccga gcccaagctg ttcggaggct tcaactcctc ggacaccgtc acctccccgc
301agagggcggg cccgctggcc ggtggagtga ccacctttgt ggccctctat gactatgagt
361ctaggacgga gacagacctg tccttcaaga aaggcgagcg gctccagatt gtcaacaaca
421cagagggaga ctggtggctg gcccactcgc tcagcacagg acagacaggc tacatcccca
481gcaactacgt ggcgccctcc gactccatcc aggctgagga gtggtatttt ggcaagatca
541ccagacggga gtcagagcgg ttactgctca atgcagagaa cccgagaggg accttcctcg
601tgcgagaaag tgagaccacg aaaggtgcct actgcctctc agtgtctgac ttcgacaacg
661ccaagggcct caacgtgaag cactacaaga tccgcaagct ggacagcggc ggcttctaca
721tcacctcccg cacccagttc aacagcctgc agcagctggt ggcctactac tccaaacacg
781ccgatggcct gtgccaccgc ctcaccaccg tgtgccccac gtccaagccg cagactcagg
841gcctggccaa ggatgcctgg gagatccctc gggagtcgct gcggctggag gtcaagctgg
901gccagggctg ctttggcgag gtgtggatgg ggacctggaa cggtaccacc agggtggcca
961tcaaaaccct gaagcctggc acgatgtctc cagaggcctt cctgcaggag gcccaggtca
1021tgaagaagct gaggcatgag aagctggtgc agttgtatgc tgtggtttca gaggagccca
1081tttacatcgt cacggagtac atgagcaagg ggagtttgct ggactttctc aagggggaga
1141caggcaagta cctgcggctg cctcagctgg tggacatggc tgctcagatc gcctcaggca
1201tggcgtacgt ggagcggatg aactacgtcc accgggacct tcgtgcagcc aacatcctgg
1261tgggagagaa cctggtgtgc aaagtggccg actttgggct ggctcggctc attgaagaca
1321atgagtacac ggcgcggcaa ggtgccaaat tccccatcaa gtggacggct ccagaagctg
1381ccctctatgg ccgcttcacc atcaagtcgg acgtgtggtc cTTCGGGATC CTGCTGACTG
1441AGCTCACCAC AAAGGGACGG GTGCCCTACC CTGGGATGGT GAACCGCGAG GTGCTGGACC
1501AGGTGGAGCG GGGCTACCGG ATGCCCTGCC CGCCGGAGTG TCCCGAGTCC CTGCACGACC
1561TCATGTGCCA GTGCTGGCGG AAGGAGCCTG AGGAGCGGCC CACCTTCGAG TACCTGCAGG
1621CCTTCCTGGA GGACTACTTC ACGTCCACCG AGCCCCAGTT CCAGCCCGGG GAGAACCTCT
1681AGGACCCAGC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
1741TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
1801GGCTTTATAT ATCTTGTGGA AAGGACGATA ATATCATACA TGAAACAATG TTACGCGTTA
1861AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)

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