Construct: ORF TRCN0000489067
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF020959.1_s317c1
- DNA Barcode:
- GTTACATCGATAACTAGACCGGTC
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- OR13A1 (79290)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000489067
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79290 | OR13A1 | olfactory receptor family 1... | NM_001004297.3 | 94.2% | 94.2% | 1_57del |
| 2 | human | 79290 | OR13A1 | olfactory receptor family 1... | XM_011540147.3 | 94.2% | 94.2% | 1_57del |
| 3 | human | 79290 | OR13A1 | olfactory receptor family 1... | XM_017016632.2 | 94.2% | 94.2% | 1_57del |
| 4 | human | 79290 | OR13A1 | olfactory receptor family 1... | XM_017016633.2 | 94.2% | 94.2% | 1_57del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 999
- ORF length:
- 927
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catgatgagt aaccagacgt tggtaaccga gttcatcctg cagggctttt 121 cggagcaccc agaataccgg gtgttcttat tcagctgttt cctcttcctc tactctgggg 181 ccctcacagg taatgtcctc atcaccttgg ccatcacgtt caaccctggg ctccacgctc 241 ctatgtactt tttcttactc aacttggcta ctatggacat tatctgcacc tcttccatca 301 tgcccaaggc gctggccagt ctggtgtcgg aagagagctc catctcctac gggggctgca 361 tggcccagct ctatttcctc acgtgggctg catcctcaga gctgctgctc ctcacggtca 421 tggcctatga ccggtacgca gccatctgcc acccgctgca ttacagcagc atgatgagca 481 aggtgttctg cagcgggctg gccacagccg tgtggctgct ctgcgccgtc aacacggcca 541 tccacacggg gctgatgctg cgcttggatt tctgtggccc caatgtcatt atccatttct 601 tctgcgaggt ccctcccctg ctgcttctct cctgcagctc cacctacgtc aacggtgtca 661 tgattgtcct ggcggatgct ttcTACGGCA TAGTGAACTT CCTGATGACC ATCGCGTCCT 721 ATGGCTTCAT CGTCTCCAGC ATCCTGAAGG TGAAGACTGC CTGGGGGAGG CAGAAAGCCT 781 TCTCCACCTG CTCTTCCCAC CTCACCGTGG TGTGCATGTA TTACACCGCT GTCTTCTACG 841 CCTACATAAG CCCGGTCTCT GGCTACAGCG CAGGGAAGAG CAAGTTGGCT GGCCTGCTGT 901 ACACTGTGCT GAGTCCTACC CTCAACCCCC TCATCTATAC TTTGAGAAAC AAGGAGGTCA 961 AAGCAGCCCT CAGGAAGCTT TTCCCTTTCT TCAGAAATTA GAACCCAGCT TTCTTGTACA 1021 AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT 1081 AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA 1141 AGGACGAGTT ACATCGATAA CTAGACCGGT CACGCGTTAA GTCgacaatc aacctctgga 1201 ttacaaaatt tgtgaaagat t