Construct: ORF TRCN0000489152
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF020789.1_s317c1
- DNA Barcode:
- GTATGCTAAACCCCGGAGGACATT
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- SLC52A2 (79581)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000489152
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79581 | SLC52A2 | solute carrier family 52 me... | NM_001253815.2 | 100% | 100% | |
| 2 | human | 79581 | SLC52A2 | solute carrier family 52 me... | NM_001253816.2 | 100% | 100% | |
| 3 | human | 79581 | SLC52A2 | solute carrier family 52 me... | NM_001363118.2 | 100% | 100% | |
| 4 | human | 79581 | SLC52A2 | solute carrier family 52 me... | NM_001363120.2 | 100% | 100% | |
| 5 | human | 79581 | SLC52A2 | solute carrier family 52 me... | NM_001363121.2 | 100% | 100% | |
| 6 | human | 79581 | SLC52A2 | solute carrier family 52 me... | NM_024531.5 | 100% | 100% | |
| 7 | human | 55065 | SLC52A1 | solute carrier family 52 me... | NM_001104577.1 | 86.7% | 86.1% | (many diffs) |
| 8 | human | 55065 | SLC52A1 | solute carrier family 52 me... | NM_017986.4 | 86.7% | 86.1% | (many diffs) |
| 9 | human | 55065 | SLC52A1 | solute carrier family 52 me... | XM_011523951.2 | 86.7% | 86.1% | (many diffs) |
| 10 | human | 79581 | SLC52A2 | solute carrier family 52 me... | XM_011517300.2 | 80.2% | 80.2% | 0_1ins264 |
| 11 | human | 79581 | SLC52A2 | solute carrier family 52 me... | NM_001363122.2 | 63.1% | 63.1% | 129_130ins492 |
| 12 | human | 79581 | SLC52A2 | solute carrier family 52 me... | XM_017013821.1 | 63.1% | 63.1% | 129_130ins492 |
| 13 | human | 79581 | SLC52A2 | solute carrier family 52 me... | XM_017013822.1 | 63.1% | 63.1% | 129_130ins492 |
| 14 | human | 79581 | SLC52A2 | solute carrier family 52 me... | NR_045600.2 | 62.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 1407
- ORF length:
- 1335
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catggcagca cccacgcccg cccgtccggt gctgacccac ctgctggtgg 121 ctctcttcgg catgggctcc tgggctgcgg tcaatgggat ctgggtggag ctacctgtgg 181 tggtcaaaga gcttccagag ggttggagcc tcccctctta cgtctctgtg cttgtggctc 241 tggggaacct gggtctgctg gtggtgaccc tctggaggag gctggcccca ggaaaggacg 301 agcaggtccc catccgggtg gtgcaggtgc tgggcatggt gggcacagcc ctgctggcct 361 ctctgtggca ccatgtggcc ccagtggcag gacagttgca ttctgtggcc ttcttagcac 421 tggcctttgt gctggcactg gcatgctgtg cctcgaatgt cactttcctg cccttcttga 481 gccacctgcc acctcgcttc ttacggtcat tcttcctggg tcaaggcctg agtgccctgc 541 tgccctgcgt gctggcccta gtgcagggtg tgggccgcct cgagtgcccg ccagccccca 601 tcaacggcac ccctggcccc ccgctcgact tccttgagcg ttttcccgcc agcaccttct 661 tctgggcact gactgccctt ctggtcgctt cagctgctgc cttccagggt cttctgctgc 721 tgttgccgcc accaccatct gtacccacag gggagttagg atcaggcctc caggtgggag 781 ccccaggagc agaggaagag gtggaagagt cctcaccact gcaagagcca ccaagccagg 841 cagcaggcac cacccctggt ccagacccta aggcctatca gcttctatca gcccgcagtg 901 cctgcctgct gggcctgttg gccgccacca acgcgctgac caatggcgtg ctgcctgccg 961 tgcagagctt ttcctgctta ccctacgggc gtctggccta ccacctggct gtggtgctgg 1021 gcagtgctgc caaTCCCCTG GCCTGCTTCC TGGCCATGGG TGTGCTGTGC AGGTCCTTGG 1081 CAGGGCTGGG CGGCCTCTCT CTGCTGGGCG TGTTCTGTGG GGGCTACCTG ATGGCGCTGG 1141 CAGTCCTGAG CCCCTGCCCG CCCCTGGTGG GCACCTCGGC GGGGGTGGTC CTCGTGGTGC 1201 TGTCGTGGGT GCTGTGTCTT GGCGTGTTCT CCTACGTGAA GGTGGCAGCC AGCTCCCTGC 1261 TGCATGGCGG GGGCCGGCCG GCATTGCTGG CAGCCGGCGT GGCCATCCAG GTGGGCTCTC 1321 TGCTCGGCGC TGTTGCTATG TTCCCCCCGA CCAGCATCTA TCACGTGTTC CACAGCAGAA 1381 AGGACTGTGC AGACCCCTGT GACTCCTAGG ACCCAGCTTT CTTGTACAAA GTGGTTGATA 1441 TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC 1501 CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGAGTATG 1561 CTAAACCCCG GAGGACATTA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg 1621 tgaaagatt