Construct: ORF TRCN0000489286
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF020353.1_s317c1
- DNA Barcode:
- ATTGTATCCACTTTATCAGGTCAA
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- SHPK (23729)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000489286
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23729 | SHPK | sedoheptulokinase | NM_013276.4 | 100% | 100% | |
| 2 | mouse | 74637 | Shpk | sedoheptulokinase | NM_029031.3 | 85.3% | 87.2% | (many diffs) |
| 3 | mouse | 74637 | Shpk | sedoheptulokinase | XR_003949525.1 | 38% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 1506
- ORF length:
- 1434
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catggctgcg cggccgatca ccctcggcat tgacctgggc accacatctg 121 tgaaggcagc tctgctgagg gccgcgcccg acgacccatc cgggttcgca gtgctggcga 181 gctgtgcccg tgctgcgcgg gcagaggcgg cggtcgagag cgcggtggcc gggccccagg 241 ggcgggagca ggatgtgagt agaatcctcc aagccctaca cgagtgcctt gctgcccttc 301 cccgacccca gctccggagc gtcgtgggca tcggggtgtc gggccagatg catggagtcg 361 tgttttggaa aacaggccaa ggctgtgaat ggacagaggg agggattacc ccggtgttcg 421 agccccgagc tgttagccac ctggtcacgt ggcaggatgg ccgatgtagc agcgaattcc 481 tggcctctct gccccagccg aagtctcatc tcagtgtggc cacgggcttc ggctgtgcaa 541 ccatcttctg gcttttgaaa tatcgcccag agttcctgaa gtcctacgac gcagccggta 601 ccatccacga ctatgtggtt gccatgctgt gtggcttgcc aagacctctg atgtccgacc 661 agaatgctgc cagctggggc tatttcaaca cgcagagcca aagctggaac gtagagacac 721 tgaggagctc gggttttcct gtccacctgc tcccagacat cgccgagcct ggcagtgtgg 781 cgggcagaac ttcccacatg tggtttgaaa tcccaaaggg gacgcaggtg ggagtggcct 841 tgggtgattt acaggcctct gtctattcct gcatggccca gaggacagat gcagttctca 901 acatcagcac ctcggttcag ctggcagcct ccatgccttc aggattccag cctgcacaga 961 ctccagaccc tacggcccca gtcgcctact tcccatactt caacaggacc tacctggggg 1021 tggccgcgtc actcaacggg ggcaatgtgc tggccacgtt cgtccacatg ctggttcagt 1081 ggatggcaga tctaggcctg gaggttgaag aatccactgt gtattcacgc atgattcagg 1141 cagctgtgca gcagagagat acccacctga ccatcacccc gacagtgctg ggggagaggc 1201 acctgccgga ccagctggcc tcagtgacca gaatctcctc cTCCGACCTC TCCCTGGGGC 1261 ACGTGACCCG GGCTCTGTGC CGAGGCATTG TTCAGAACCT GCACTCCATG CTTCCGATTC 1321 AGCAGCTCCA GGAGTGGGGC GTGGAGAGGG TGATGGGCAG TGGGAGTGCG CTGTCCAGGA 1381 ATGACGTGCT GAAGCAGGAG GTGCAGAGGG CTTTCCCTTT GCCCATGTCC TTTGGGCAGG 1441 ATGTGGATGC AGCTGTCGGG GCAGCTCTGG TCATGCTCCG GAGACACCTC AACCAGAAGG 1501 AATCTTGAGA CCCAGCTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC 1561 CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA 1621 TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAATTGTA TCCACTTTAT CAGGTCAAAC 1681 GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt