Construct: ORF TRCN0000489313
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF021360.1_s317c1
- DNA Barcode:
- ACCCTGCCAACCTACGGAAAACCC
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- SENP8 (123228)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000489313
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 123228 | SENP8 | SUMO peptidase family membe... | NM_001166340.1 | 99.8% | 99.5% | 619A>G |
2 | human | 123228 | SENP8 | SUMO peptidase family membe... | NM_001172109.1 | 99.8% | 99.5% | 619A>G |
3 | human | 123228 | SENP8 | SUMO peptidase family membe... | NM_001172110.1 | 99.8% | 99.5% | 619A>G |
4 | human | 123228 | SENP8 | SUMO peptidase family membe... | NM_001172111.2 | 99.8% | 99.5% | 619A>G |
5 | human | 123228 | SENP8 | SUMO peptidase family membe... | NM_145204.4 | 99.8% | 99.5% | 619A>G |
6 | human | 123228 | SENP8 | SUMO peptidase family membe... | XM_005254157.3 | 99.8% | 99.5% | 619A>G |
7 | human | 123228 | SENP8 | SUMO peptidase family membe... | XM_011521217.2 | 99.8% | 99.5% | 619A>G |
8 | human | 123228 | SENP8 | SUMO peptidase family membe... | XM_011521215.2 | 82.6% | 82.4% | 1_132del;751A>G |
9 | mouse | 71599 | Senp8 | SUMO/sentrin specific pepti... | NM_001172068.1 | 86.7% | 89.1% | (many diffs) |
10 | mouse | 71599 | Senp8 | SUMO/sentrin specific pepti... | NM_001172069.1 | 86.7% | 89.1% | (many diffs) |
11 | mouse | 71599 | Senp8 | SUMO/sentrin specific pepti... | NM_001172070.1 | 86.7% | 89.1% | (many diffs) |
12 | mouse | 71599 | Senp8 | SUMO/sentrin specific pepti... | NM_027838.3 | 86.7% | 89.1% | (many diffs) |
13 | mouse | 71599 | Senp8 | SUMO/sentrin specific pepti... | NM_001172071.1 | 81.9% | 84.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 708
- ORF length:
- 636
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catggacccc gtagtcttga gttacatgga cagtctactg cggcaatcag 121 atgtctcact attggatccg ccaagctggc tcaatgacca tattattggg tttgcgtttg 181 agtactttgc caacagtcag tttcatgact gctctgatca cgtcagtttc atcagccctg 241 aagtcaccca gttcatcaag tgcactagca acccagcaga gattgccatg ttccttgaac 301 cactggacct ccccaacaag agagttgtat ttttagccat caatgataac tccaaccagg 361 cagctGGAGG AACCCACTGG AGTTTATTGG TCTACCTCCA AGATAAAAAT AGCTTTTTTC 421 ATTATGATTC CCATAGCAGG AGCAACTCAG TTCACGCAAA GCAGGTAGCA GAGAAACTGG 481 AGGCTTTCTT AGGCAGAAAA GGAGACAAAC TGGCCTTTGT GGAAGAGAAA GCCCCTGCCC 541 AACAAAACAG CTATGACTGT GGGATGTACG TGATATGTAA CACTGAGGCC TTGTGTCAGA 601 ACTTCTTTAG GCAACAGACA GAATCACTGC TGCAGCTACT CACCCCTGCA TACATCACAA 661 AGAAGAGGGG AGAATGGAAA GATCTCATTG CCACACTTGC TAAAAAGTAG AACCCAGCTT 721 TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT 781 CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT 841 CTTGTGGAAA GGACGAACCC TGCCAACCTA CGGAAAACCC ACGCGTTAAG TCgacaatca 901 acctctggat tacaaaattt gtgaaagatt