Construct: ORF TRCN0000489313

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF021360.1_s317c1
DNA Barcode:
ACCCTGCCAACCTACGGAAAACCC
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
SENP8 (123228)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000489313
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 123228 SENP8 SUMO peptidase family membe... NM_001166340.1 99.8% 99.5% 619A>G
2 human 123228 SENP8 SUMO peptidase family membe... NM_001172109.1 99.8% 99.5% 619A>G
3 human 123228 SENP8 SUMO peptidase family membe... NM_001172110.1 99.8% 99.5% 619A>G
4 human 123228 SENP8 SUMO peptidase family membe... NM_001172111.2 99.8% 99.5% 619A>G
5 human 123228 SENP8 SUMO peptidase family membe... NM_145204.4 99.8% 99.5% 619A>G
6 human 123228 SENP8 SUMO peptidase family membe... XM_005254157.3 99.8% 99.5% 619A>G
7 human 123228 SENP8 SUMO peptidase family membe... XM_011521217.2 99.8% 99.5% 619A>G
8 human 123228 SENP8 SUMO peptidase family membe... XM_011521215.2 82.6% 82.4% 1_132del;751A>G
9 mouse 71599 Senp8 SUMO/sentrin specific pepti... NM_001172068.1 86.7% 89.1% (many diffs)
10 mouse 71599 Senp8 SUMO/sentrin specific pepti... NM_001172069.1 86.7% 89.1% (many diffs)
11 mouse 71599 Senp8 SUMO/sentrin specific pepti... NM_001172070.1 86.7% 89.1% (many diffs)
12 mouse 71599 Senp8 SUMO/sentrin specific pepti... NM_027838.3 86.7% 89.1% (many diffs)
13 mouse 71599 Senp8 SUMO/sentrin specific pepti... NM_001172071.1 81.9% 84.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
72
ORF end:
708
ORF length:
636
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcac catggacccc gtagtcttga gttacatgga cagtctactg cggcaatcag
121atgtctcact attggatccg ccaagctggc tcaatgacca tattattggg tttgcgtttg
181agtactttgc caacagtcag tttcatgact gctctgatca cgtcagtttc atcagccctg
241aagtcaccca gttcatcaag tgcactagca acccagcaga gattgccatg ttccttgaac
301cactggacct ccccaacaag agagttgtat ttttagccat caatgataac tccaaccagg
361cagctGGAGG AACCCACTGG AGTTTATTGG TCTACCTCCA AGATAAAAAT AGCTTTTTTC
421ATTATGATTC CCATAGCAGG AGCAACTCAG TTCACGCAAA GCAGGTAGCA GAGAAACTGG
481AGGCTTTCTT AGGCAGAAAA GGAGACAAAC TGGCCTTTGT GGAAGAGAAA GCCCCTGCCC
541AACAAAACAG CTATGACTGT GGGATGTACG TGATATGTAA CACTGAGGCC TTGTGTCAGA
601ACTTCTTTAG GCAACAGACA GAATCACTGC TGCAGCTACT CACCCCTGCA TACATCACAA
661AGAAGAGGGG AGAATGGAAA GATCTCATTG CCACACTTGC TAAAAAGTAG AACCCAGCTT
721TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
781CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
841CTTGTGGAAA GGACGAACCC TGCCAACCTA CGGAAAACCC ACGCGTTAAG TCgacaatca
901acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)