Construct: ORF TRCN0000489355

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF021429.1_s317c1
DNA Barcode:
AGTTTTTAATTCTATTACGGATGT
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
FRMPD2 (143162)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000489355
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 143162 FRMPD2 FERM and PDZ domain contain... XM_011539327.2 90.3% 88.6% (many diffs)
2 human 143162 FRMPD2 FERM and PDZ domain contain... NM_001018071.4 46.7% 45.8% (many diffs)
3 human 143162 FRMPD2 FERM and PDZ domain contain... NM_001318191.1 44.6% 43.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
87
ORF end:
1929
ORF length:
1842
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaagcgg
61ccgccccctt caccggatcc ttttggatgc agcctttaac gaaggacgca ggcatgagcc
121tgtcctctgt gacgctggcc agcgccctac aggtcagggg tgaagctctg tctgaggagg
181aaatctggtc cctcctgttc ctggccgctg agcagctcct ggaagacctc cgcaacgatt
241cctcggacta tgtggtttgc ccctggtcag ccctgctttc tgcagctgga agcctttctt
301tccaaggccg tgtttctcat atagaggctg ctcctttcaa ggcccctgaa ctgctacagg
361gacagagtga ggatgagcag cctgatgcat ctcagatgca tgtctattct ttaggaatga
421ccctctactg gtcagcaggg tttcatgttc cgccacatca gcccctgcag ctctgcgagc
481ccctgcactc catcctgctg accatgtgtg aagaccagcc tcacaggcgg tgcacgttgc
541agtcggttct ggaagcttgt cgggttcatg agaaagaagt gtctgtctac ccagcccctg
601ctggtctcca catcagaagg ctggttggct tggttctggg taccatttct gaggtggaga
661aaagagttgt ggaggaaagc tcctctgtgc agcagaacag aagctacctg ctcaggaaga
721ggctgcgtgg gacaagcagc gagagcccag cggcacaggc cccggagtgt ctgcatcctt
781gcagagtttc agaaagaagc acggagaccc agagctcacc agagccccat tggagcacct
841tgacacacag tcactgcagc ctccttgtta accgcgctct tccaggagca gatccccagg
901accagcaggc gggccggagg ctcagctctg gatctgtgca ctcggcagca gacagctcat
961ggccaacaac tccttctcag aggggttttc tgcaaagaag gagcaagttt tccaggccag
1021agttcatcct gttggctgga gaggccccga tgacactaca tctgccggga tcggttgtga
1081ccaaaaaagg gaaatcctat ttggctctca gggacctctg tgtggtcctg ctgaacgggc
1141agcacctgga ggtaaaatgt gatgttgaat caacagtggg agctgtcttc aatgccgtga
1201catcctttgc caacctcgag gaactcacct actttggctt ggcgtatatg aaaagcaaag
1261agttcttttt cctggacagt gaaaccagat tgtgcaaaat agctcctgaa ggctggagag
1321agcagcctca gaagacctcc atgaatacct tcacactctt cctgaggata aagttctttg
1381tcagccacta tgggctgctc cagcacagcc tgacaaggca ccagttttac ctgcagcttc
1441ggaaagatat cctggaggag aggctgtact gcaatgaaga gatactgctg cagctggggg
1501tccttgcctT GCAGGCTGAG TTTGGCAATT ACCCTAAGGA GCAGGTGGAG AGTAAGCCAT
1561ACTTTCACGT TGAAGATTAC ATCCCAGCGA GTCTGATCGA GAGGATGACC GCTCTACGGG
1621TCCAGGTTGA AGTCTCAGAG ATGCACCGGC TCAGCTCTGC ACTGTGGGGA GAGGATGCTG
1681AGCTGAAGTT CTTGAGGGTC ACTCAGCAGC TCCCAGAATA CGGTGTGCTG GTTCACCAAG
1741TATTCTCAGA GAAGAGGAGG CCAGAAGAGG AGATGGCCCT GGGGATCTGT GCCAAGGGTG
1801TCATAGTCTA TGAAGTGAAA AACAACAGCA GAATTGCAAT GTTACGGTTT CAGTGGAGAG
1861AAACCGGGAA GATTTCTACT TATGTGAGTG TAGCTCAGTT GATAAATAAC CTGCACTTCA
1921TTTTCCTTTG AAGGGTGGGC GCGCCGACCC AGCTTTCTTG TACAAAGTGG TTGATATCGG
1981TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA
2041ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG AAGTTTTTAA
2101TTCTATTACG GATGTACGCG TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa
2161agatt

Download FASTA (ORF) (Full)

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