Construct: ORF TRCN0000489441

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019270.1_s317c1
DNA Barcode:
ACCGGTACGGAACATTAGAGCTGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC52A1 (55065)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000489441
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55065 SLC52A1 solute carrier family 52 me... NM_001104577.1 99.8% 99.7% 209A>G;1263T>A
2 human 55065 SLC52A1 solute carrier family 52 me... NM_017986.4 99.8% 99.7% 209A>G;1263T>A
3 human 55065 SLC52A1 solute carrier family 52 me... XM_011523951.2 99.8% 99.7% 209A>G;1263T>A
4 human 79581 SLC52A2 solute carrier family 52 me... NM_001253815.2 86.8% 86.3% (many diffs)
5 human 79581 SLC52A2 solute carrier family 52 me... NM_001253816.2 86.8% 86.3% (many diffs)
6 human 79581 SLC52A2 solute carrier family 52 me... NM_001363118.2 86.8% 86.3% (many diffs)
7 human 79581 SLC52A2 solute carrier family 52 me... NM_001363120.2 86.8% 86.3% (many diffs)
8 human 79581 SLC52A2 solute carrier family 52 me... NM_001363121.2 86.8% 86.3% (many diffs)
9 human 79581 SLC52A2 solute carrier family 52 me... NM_024531.5 86.8% 86.3% (many diffs)
10 human 79581 SLC52A2 solute carrier family 52 me... XM_011517300.2 69.1% 68.7% (many diffs)
11 human 79581 SLC52A2 solute carrier family 52 me... NM_001363122.2 54.2% 53.3% (many diffs)
12 human 79581 SLC52A2 solute carrier family 52 me... XM_017013821.1 54.2% 53.3% (many diffs)
13 human 79581 SLC52A2 solute carrier family 52 me... XM_017013822.1 54.2% 53.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
75
ORF end:
1419
ORF length:
1344
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcgc caccatggca gcacccacgc tgggccgtct ggtgctgacc cacctgctgg
121tggccctttt tggcatgggc tcctgggctg ctgtgaacgg gatctgggtg gagctgcctg
181tggtggtaaa agaccttcca gagggttgga gcctcccctc atacctctct gtggttgtgg
241cgctgggaaa cctgggtctg ctggtggtga ccctgtggag gcggctggcc ccgggcaagg
301gcgagcaggt ccccatccag gtggtacagg tgctgagtgt agtgggcaca gccctgctgg
361cccctctgtg gcaccacgtg gccccagtgg cagggcagct ccactctgtg gccttcctaa
421ctctggcctt ggtgttggca atggcctgtt gtacctctaa tgtcactttc ctgcccttcc
481tgagccacct gccacctcct ttcttacggt ctttcttcct gggtcagggt ctcagtgccc
541tactcccctg tgtgctggcc ctagtgcaag gtgtgggccg cctcgagtgc ccaccagcgc
601ccaccaatgg cacctctggg cctcccctcg acttccctga gcgttttcct gccagcacct
661tcttctgggc actgactgcc cttctggtca cttcagctgc cgccttccgg ggtctcctgt
721tgctgttgcc atcactaccc tctgtaacca cagggggctc agggcctgaa cttcaactgg
781gatccccagg agcagaggag gaagagaagg aggaagaaga ggctttgcca ttgcaggagc
841caccgagcca ggcagcaggc accatccctg gcccagaccc tgaggcccat cagctgttct
901cagcccatgg tgccttcctg ctgggcctga tggccttcac cagtgccgtg accaatggcg
961tgctgccttc tgtgcagagc ttttcctgtt tgccctatgg gcgcctggcc taccacctgg
1021ctgtggtgct gggcagtgcc gccaaccccc ttgccTGCTT CCTGGCCATG GGCGTGCTGT
1081GCAGGTCCCT GGCAGGGCTG GTTGGTCTTT CTCTGCTGGG CATGCTCTTT GGGGCCTACC
1141TGATGGCACT GGCAATCCTG AGCCCCTGCC CACCCCTGGT GGGCACCACT GCAGGGGTGG
1201TCCTTGTGGT GCTGTCGTGG GTGCTGTGTC TGTGTGTGTT CTCATATGTG AAGGTGGCTG
1261CAAGCTCCCT GCTGCATGGT GGGGGTCGGC CGGCATTGCT GGCAGCTGGT GTGGCCATCC
1321AAGTGGGCTC CCTGCTAGGT GCCGGTGCCA TGTTCCCTCC CACCAGCATC TACCACGTGT
1381TTCAAAGCAG AAAGGACTGT GTAGACCCCT GTGGCCCCGA CCCAGCTTTC TTGTACAAAG
1441TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT
1501GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG
1561ACGAACCGGT ACGGAACATT AGAGCTGCAC GCGTTAAGTC gacaatcaac ctctggatta
1621caaaatttgt gaaagatt

Download FASTA (ORF) (Full)

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