Construct: ORF TRCN0000489519
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF021155.1_s317c1
- DNA Barcode:
- ATCTTAACGATATAAAGTCATCGA
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- TBXA2R (6915)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000489519
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6915 | TBXA2R | thromboxane A2 receptor | NM_001060.6 | 99.9% | 100% | 924T>C |
| 2 | human | 6915 | TBXA2R | thromboxane A2 receptor | XM_011528214.2 | 99.9% | 100% | 924T>C |
| 3 | human | 6915 | TBXA2R | thromboxane A2 receptor | NM_201636.3 | 82.8% | 81.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 1101
- ORF length:
- 1029
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catgtggccc aacggcagtt ccctggggcc ctgtttccgg cccacaaaca 121 ttaccctgga ggagagacgg ctgatcgcct cgccctggtt cgccgcctcc ttctgcgtgg 181 tgggcctggc ctccaacctg ctggccctga gcgtgctggc gggcgcgcgg caggggggtt 241 cgcacacgcg ctcctccttc ctcaccttcc tctgcggcct cgtcctcacc gacttcctgg 301 ggctgctggt gaccggtacc atcgtggtgt cccagcacgc cgcgctcttc gagtggcacg 361 ccgtggaccc tggctgccgt ctctgtcgct tcatgggcgt cgtcatgatc ttcttcggcc 421 tgtccccgct gctgctgggg gccgccatgg cctcagagcg ctacctgggt atcacccggc 481 ccttctcgcg cccggcggtc gcctcgcagc gccgcgcctg ggccaccgtg gggctggtgt 541 gggcggccgc gctggcgctg ggcctgctgc ccctgctggg cgtgggtcgc tacaccgtgc 601 aatacccggg gtcctggtgc ttcctgacgc tgggcgccga gtccggggac gtggccttcg 661 ggctgctctt ctccatgctg ggcggcctct cggtcgggct gtccttccTG CTGAACACGG 721 TCAGCGTGGC CACCCTGTGC CACGTCTACC ACGGGCAGGA GGCGGCCCAG CAGCGTCCCC 781 GGGACTCCGA GGTGGAGATG ATGGCTCAGC TCCTGGGGAT CATGGTGGTG GCCAGCGTGT 841 GTTGGCTGCC CCTTCTGGTC TTCATCGCCC AGACAGTGCT GCGAAACCCG CCTGCCATGA 901 GCCCCGCCGG GCAGCTGTCC CGCACCACGG AGAAGGAGCT GCTCATCTAC TTGCGCGTGG 961 CCACCTGGAA CCAGATCCTG GACCCCTGGG TGTACATCCT GTTCCGCCGC GCCGTGCTCC 1021 GGCGTCTCCA GCCTCGCCTC AGCACCCGGC CCAGGTCGCT GTCCCTCCAG CCCCAGCTCA 1081 CGCAGCGCTC CGGGCTGCAG TAGGACCCAG CTTTCTTGTA CAAAGTGGTT GATATCGGTA 1141 AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC 1201 TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAA TCTTAACGAT 1261 ATAAAGTCAT CGAACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag 1321 att