Construct: ORF TRCN0000489640
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF021168.1_s317c1
- DNA Barcode:
- CCATAATACTCTCTGATTAAAAAA
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- SLC52A1 (55065)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000489640
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55065 | SLC52A1 | solute carrier family 52 me... | NM_001104577.1 | 99.8% | 99.7% | 209A>G;1263T>A |
| 2 | human | 55065 | SLC52A1 | solute carrier family 52 me... | NM_017986.4 | 99.8% | 99.7% | 209A>G;1263T>A |
| 3 | human | 55065 | SLC52A1 | solute carrier family 52 me... | XM_011523951.2 | 99.8% | 99.7% | 209A>G;1263T>A |
| 4 | human | 79581 | SLC52A2 | solute carrier family 52 me... | NM_001253815.2 | 86.8% | 86.3% | (many diffs) |
| 5 | human | 79581 | SLC52A2 | solute carrier family 52 me... | NM_001253816.2 | 86.8% | 86.3% | (many diffs) |
| 6 | human | 79581 | SLC52A2 | solute carrier family 52 me... | NM_001363118.2 | 86.8% | 86.3% | (many diffs) |
| 7 | human | 79581 | SLC52A2 | solute carrier family 52 me... | NM_001363120.2 | 86.8% | 86.3% | (many diffs) |
| 8 | human | 79581 | SLC52A2 | solute carrier family 52 me... | NM_001363121.2 | 86.8% | 86.3% | (many diffs) |
| 9 | human | 79581 | SLC52A2 | solute carrier family 52 me... | NM_024531.5 | 86.8% | 86.3% | (many diffs) |
| 10 | human | 79581 | SLC52A2 | solute carrier family 52 me... | XM_011517300.2 | 69.1% | 68.7% | (many diffs) |
| 11 | human | 79581 | SLC52A2 | solute carrier family 52 me... | NM_001363122.2 | 54.2% | 53.3% | (many diffs) |
| 12 | human | 79581 | SLC52A2 | solute carrier family 52 me... | XM_017013821.1 | 54.2% | 53.3% | (many diffs) |
| 13 | human | 79581 | SLC52A2 | solute carrier family 52 me... | XM_017013822.1 | 54.2% | 53.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 1416
- ORF length:
- 1344
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catggcagca cccacgctgg gccgtctggt gctgacccac ctgctggtgg 121 ccctttttgg catgggctcc tgggctgctg tgaacgggat ctgggtggag ctgcctgtgg 181 tggtaaaaga ccttccagag ggttggagcc tcccctcata cctctctgtg gttgtggcgc 241 tgggaaacct gggtctgctg gtggtgaccc tgtggaggcg gctggccccg ggcaagggcg 301 agcaggtccc catccaggtg gtacaggtgc tgagtgtagt gggcacagcc ctgctggccc 361 ctctgtggca ccacgtggcc ccagtggcag ggcagctcca ctctgtggcc ttcctaactc 421 tggccttggt gttggcaatg gcctgttgta cctctaatgt cactttcctg cccttcctga 481 gccacctgcc acctcctttc ttacggtctt tcttcctggg tcagggtctc agtgccctac 541 tcccctgtgt gctggcccta gtgcaaggtg tgggccgcct cgagtgccca ccagcgccca 601 ccaatggcac ctctgggcct cccctcgact tccctgagcg ttttcctgcc agcaccttct 661 tctgggcact gactgccctt ctggtcactt cagctgccgc cttccggggt ctcctgttgc 721 tgttgccatc actaccctct gtaaccacag ggggctcagg gcctgaactt caactgggat 781 ccccaggagc agaggaggaa gagaaggagg aagaagaggc tttgccattg caggagccac 841 cgagccaggc agcaggcacc atccctggcc cagaccctga ggcccatcag ctgttctcag 901 cccatggtgc cttcctgctg ggcctgatgg ccttcaccag tgccgtgacc aatggcgtgc 961 tgccttctgt gcagagcttt tcctgtttgc cctatgggcg cctggcctac cacctggctg 1021 tggtgctggg cagtgccgcc aacccccttg ccTGCTTCCT GGCCATGGGC GTGCTGTGCA 1081 GGTCCCTGGC AGGGCTGGTT GGTCTTTCTC TGCTGGGCAT GCTCTTTGGG GCCTACCTGA 1141 TGGCACTGGC AATCCTGAGC CCCTGCCCAC CCCTGGTGGG CACCACTGCA GGGGTGGTCC 1201 TTGTGGTGCT GTCGTGGGTG CTGTGTCTGT GTGTGTTCTC ATATGTGAAG GTGGCTGCAA 1261 GCTCCCTGCT GCATGGTGGG GGTCGGCCGG CATTGCTGGC AGCTGGTGTG GCCATCCAAG 1321 TGGGCTCCCT GCTAGGTGCC GGTGCCATGT TCCCTCCCAC CAGCATCTAC CACGTGTTTC 1381 AAAGCAGAAA GGACTGTGTA GACCCCTGTG GCCCCTGAGA CCCAGCTTTC TTGTACAAAG 1441 TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT 1501 GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG 1561 ACGACCATAA TACTCTCTGA TTAAAAAAAC GCGTTAAGTC gacaatcaac ctctggatta 1621 caaaatttgt gaaagatt