Construct: ORF TRCN0000489680

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF022032.1_s317c1
DNA Barcode:
GGATCCCTTTAAATCTGCTAGTAA
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
SLC28A3 (64078)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000489680
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64078 SLC28A3 solute carrier family 28 me... NM_001199633.2 99.8% 100% 267A>G;651T>C;867G>A
2 human 64078 SLC28A3 solute carrier family 28 me... NM_022127.3 99.8% 100% 267A>G;651T>C;867G>A
3 human 64078 SLC28A3 solute carrier family 28 me... XM_011518905.2 87.9% 89.4% (many diffs)
4 human 64078 SLC28A3 solute carrier family 28 me... XM_011518906.2 87.9% 89.4% (many diffs)
5 human 64078 SLC28A3 solute carrier family 28 me... XM_011518907.2 87.8% 83.1% (many diffs)
6 human 64078 SLC28A3 solute carrier family 28 me... XR_929832.2 69.8% (many diffs)
7 human 64078 SLC28A3 solute carrier family 28 me... XM_011518908.2 68.7% 67.8% (many diffs)
8 human 64078 SLC28A3 solute carrier family 28 me... XM_011518909.2 41.6% 41.3% (many diffs)
9 human 64078 SLC28A3 solute carrier family 28 me... XM_011518910.2 41.6% 41.3% (many diffs)
10 human 64078 SLC28A3 solute carrier family 28 me... NR_037638.3 40.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2142
ORF length:
2073
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcaccat ggagctgagg agtacagcag cccccagagc tgagggctac agcaacgtgg
121gcttccagaa tgaagaaaac tttcttgaga acgagaacac atcaggaaac aactcaataa
181gaagcagagc tgtgcaaagc agggagcaca caaacaccaa acaggatgaa gaacaggtca
241cagttgagca ggattctcca agaaacagag aacacatgga ggatgatgat gaggagatgc
301aacaaaaagg gtgtttggaa aggaggtatg acacggtatg tggtttctgt aggaaacaca
361aaacaactct tcggcacatc atctggggca ttttattagc aggttatctg gttatggtga
421tttcggcctg tgtgctgaac tttcacagag cccttcctct ttttgtgatc accgtggctg
481ccatcttctt tgttgtctgg gatcacctga tggccaaata cgaacatcga attgatgaga
541tgctgtctcc tggcagaagg cttctaaaca gccattggtt ctggctgaag tgggtgatct
601ggagctccct ggtcctagca gttattttct ggttggcctt tgacactgcc aaattgggtc
661aacagcagct ggtgtccttc ggtgggctca taatgtacat tgtcctgtta tttctattct
721ccaagtaccc aaccagagtt tactggagac ctgtcttatg gggaatcggg ctacagtttc
781ttcttgggct cttgattcta aggactgacc ctggatttat agcttttgat tggttgggca
841gacaagttca gacttttctg gagtacacag atgctggtgc ttcatttgtc tttggtgaga
901aatacaaaga ccacttcttt gcatttaagg tcctaccgat cgtggttttc ttcagcactg
961tgatgtccat gctgtactac ctgggactga tgcagtggat tattagaaag gttggatgga
1021tcatgctagt tactacggga tcatctccta ttgaatctgt agttgcttct ggcaatatat
1081ttgttggaca aacggagtct ccactgctgg tccgaccata tttaccttac atcaccaagt
1141ctgaactcca cgccatcatg accgccgggt tctctaccat tgctggaagc gtgctaggtg
1201catacatttc ttttggggtt ccatcctccc acttgttaac agcgtcagtt atgtcagcac
1261ctgcgtcatt ggctgctgct aaactctttt ggcctgagac agaaaaacct aaaataaccc
1321tcaagaatgc catgaaaatg gaaagtggtg attcagggaa tcttctagaa gctgcaacac
1381agggagcatc ctcctccatc tccctggtgg ccaacatcgc tgtgaatctg attgccttcc
1441tggccctgct gtcttttatg aattcagccc tgtcctggtt tggaaacatg tttgactacc
1501cacagctgag ttttgagcta atctgctcct acatcttcat gcccttttcc ttcatgatgg
1561gagtggaatg gcaggacagc tttatggttg ccagactcat aggttataag accttcttca
1621atgaatttgt ggcttatgag cacctctcaa aatggatcca cttgaggaaa gaaggtggac
1681ccaaatttgt aaacggtgtg cagcaatata tatcaattcg ttctgagata atcgccactt
1741acgctctctg tggttttgcc aatatcgggt ccctaggaat cgtgatcggc ggactcacat
1801ccatggctcc TTCCAGAAAG CGTGATATCG CCTCGGGGGC AGTGAGAGCT CTGATTGCGG
1861GGACCGTGGC CTGCTTCATG ACAGCCTGCA TCGCAGGCAT ACTCTCCAGC ACTCCTGTGG
1921ACATCAACTG CCATCACGTT TTAGAGAATG CCTTCAACTC CACTTTCCCT GGAAACACAA
1981CCAAGGTGAT AGCTTGTTGC CAAAGTCTGT TGAGCAGCAC TGTTGCCAAG GGTCCTGGTG
2041AAGTCATCCC AGGAGGAAAC CACAGTCTGT ATTCTTTGAA GGGCTGCTGC ACATTGTTGA
2101ATCCATCGAC CTTTAACTGC AATGGGATCT CTAATACATT TTGAGACCCA GCTTTCTTGT
2161ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
2221AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
2281GAAAGGACGA GGATCCCTTT AAATCTGCTA GTAAACGCGT TAAGTCgaca atcaacctct
2341ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)