Transcript: Human XM_011518905.2

PREDICTED: Homo sapiens solute carrier family 28 member 3 (SLC28A3), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SLC28A3 (64078)
Length:
7387
CDS:
133..2292

Additional Resources:

NCBI RefSeq record:
XM_011518905.2
NBCI Gene record:
SLC28A3 (64078)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011518905.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000431787 GTAAACGGTGTGCAGCAATAT pLKO_005 1837 CDS 100% 13.200 18.480 N SLC28A3 n/a
2 TRCN0000043595 CGGGATCATCTCCTATTGAAT pLKO.1 1184 CDS 100% 5.625 7.875 N SLC28A3 n/a
3 TRCN0000043593 GCCAAATACGAACATCGAATT pLKO.1 661 CDS 100% 0.000 0.000 N SLC28A3 n/a
4 TRCN0000043596 GCGTGCTAGGTGCATACATTT pLKO.1 1337 CDS 100% 13.200 10.560 N SLC28A3 n/a
5 TRCN0000043594 CCGACCATATTTACCTTACAT pLKO.1 1260 CDS 100% 5.625 4.500 N SLC28A3 n/a
6 TRCN0000420241 GGACTGATGCAGTGGATTATT pLKO_005 1132 CDS 100% 15.000 10.500 N SLC28A3 n/a
7 TRCN0000418510 TGCCAGACTCATAGGTTATAA pLKO_005 1737 CDS 100% 15.000 10.500 N SLC28A3 n/a
8 TRCN0000043597 GAACGAGAACACATCAGGAAA pLKO.1 213 CDS 100% 4.950 3.465 N SLC28A3 n/a
9 TRCN0000216675 CATCCTGTTGTAGGCCATATA pLKO.1 3289 3UTR 100% 13.200 9.240 N Cobll1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011518905.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000489680 GGATCCCTTTAAATCTGCTAGTAA pLX_317 16.4% 87.9% 89.4% V5 (not translated due to prior stop codon) (many diffs) n/a
2 ccsbBroadEn_08827 pDONR223 100% 87.9% 89.3% None (many diffs) n/a
3 ccsbBroad304_08827 pLX_304 0% 87.9% 89.3% V5 (many diffs) n/a
4 TRCN0000491808 TATTACGGGTGAAAAGGACTATGT pLX_317 13.4% 87.9% 89.3% V5 (many diffs) n/a
5 TRCN0000488028 TGTCTTTGCCAAGCAGGCACTCGT pLX_317 13.5% 87.9% 89.3% V5 (not translated due to prior stop codon) (many diffs) n/a
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