Construct: ORF TRCN0000489703
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF021588.1_s317c1
- DNA Barcode:
- CACTACTAAGATGGAAAGGGACAT
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- CYB5R1 (51706)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000489703
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51706 | CYB5R1 | cytochrome b5 reductase 1 | NM_016243.3 | 100% | 100% | |
| 2 | mouse | 72017 | Cyb5r1 | cytochrome b5 reductase 1 | NM_028057.3 | 89.5% | 91.8% | (many diffs) |
| 3 | mouse | 72017 | Cyb5r1 | cytochrome b5 reductase 1 | NM_001355133.1 | 80.2% | 81.3% | (many diffs) |
| 4 | mouse | 72017 | Cyb5r1 | cytochrome b5 reductase 1 | NR_149307.1 | 33.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 984
- ORF length:
- 915
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcaccat ggggatccag acgagccccg tcctgctggc ctccctgggg gtggggctgg 121 tcactctgct cggcctggct gtgggctcct acttggttcg gaggtcccgc cggcctcagg 181 tcactctcct ggaccccaat gaaaagtacc tgctacgact gctagacaag acgactgtga 241 gccacaacac caagaggttc cgctttgccc tgcccaccgc ccaccacact ctggggctgc 301 ctgtgggcaa acatatctac ctctccaccc gaattgatgg cagcctggtc atcaggccat 361 acactcctgt caccagtgat gaggatcaag gctatgtgga tcttgtcatc aaggtctacc 421 tgaagggtgt gcaccccaaa tttcctgagg gagggaagat gtctcagtac ctggatagcc 481 tgaaggttgg ggatgtggtg gagtttcggg ggccaagcgg gttgctcact tacactggaa 541 aagggcattt taacattcag cccaaCAAGA AATCTCCACC AGAACCCCGA GTGGCGAAGA 601 AACTGGGAAT GATTGCCGGC GGGACAGGAA TCACCCCAAT GCTACAGCTG ATCCGGGCCA 661 TCCTGAAAGT CCCTGAAGAT CCAACCCAGT GCTTTCTGCT TTTTGCCAAC CAGACAGAAA 721 AGGATATCAT CTTGCGGGAG GACTTAGAGG AACTGCAGGC CCGCTATCCC AATCGCTTTA 781 AGCTCTGGTT CACTCTGGAT CATCCCCCAA AAGATTGGGC CTACAGCAAG GGCTTTGTGA 841 CTGCCGACAT GATCCGGGAA CACCTGCCCG CTCCAGGGGA TGATGTGCTG GTACTGCTTT 901 GTGGGCCACC CCCAATGGTG CAGCTGGCCT GCCATCCCAA CTTGGACAAA CTGGGCTACT 961 CACAAAAGAT GCGATTCACC TACTAGAACC CAGCTTTCTT GTACAAAGTG GTTGATATCG 1021 GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT 1081 AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GACACTACTA 1141 AGATGGAAAG GGACATACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga 1201 aagatt