Construct: ORF TRCN0000489811

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF020216.1_s317c1
DNA Barcode:
TGACGCCTGTCAGCCCGTTTCTCG
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
PI4KB (5298)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000489811
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5298 PI4KB phosphatidylinositol 4-kina... NM_001198773.3 99.8% 99.8% 786C>T;2403_2404insGTG
2 human 5298 PI4KB phosphatidylinositol 4-kina... NM_001198774.2 99.8% 99.8% 786C>T;2403_2404insGTG
3 human 5298 PI4KB phosphatidylinositol 4-kina... NM_001369624.1 99.8% 99.8% 786C>T;2403_2404insGTG
4 human 5298 PI4KB phosphatidylinositol 4-kina... NM_001369625.1 98.3% 98.4% 1_36del;822C>T;2439_2440insGTG
5 human 5298 PI4KB phosphatidylinositol 4-kina... NM_001330721.2 98% 98% 786C>T;910_954del;2448_2449insGTG
6 human 5298 PI4KB phosphatidylinositol 4-kina... NM_001369623.1 98% 98% 786C>T;910_954del;2448_2449insGTG
7 human 5298 PI4KB phosphatidylinositol 4-kina... NM_001369629.2 98% 98% 786C>T;910_954del;2448_2449insGTG
8 human 5298 PI4KB phosphatidylinositol 4-kina... XM_017001486.1 97.2% 97.3% 786C>T;2225_2287del;2466_2467insGTG
9 human 5298 PI4KB phosphatidylinositol 4-kina... XM_017001487.1 97.2% 97.3% 786C>T;2225_2287del;2466_2467insGTG
10 human 5298 PI4KB phosphatidylinositol 4-kina... XM_017001488.1 97.2% 97.3% 786C>T;2225_2287del;2466_2467insGTG
11 human 5298 PI4KB phosphatidylinositol 4-kina... NM_002651.4 96.5% 96.6% (many diffs)
12 human 5298 PI4KB phosphatidylinositol 4-kina... NM_001369628.1 95.8% 95.9% (many diffs)
13 human 5298 PI4KB phosphatidylinositol 4-kina... NM_001369626.1 95.5% 95.5% (many diffs)
14 human 5298 PI4KB phosphatidylinositol 4-kina... XM_011509635.1 95.5% 95.5% (many diffs)
15 human 5298 PI4KB phosphatidylinositol 4-kina... XM_011509637.2 95.5% 95.5% (many diffs)
16 human 5298 PI4KB phosphatidylinositol 4-kina... XM_011509634.1 94.1% 94.2% (many diffs)
17 human 5298 PI4KB phosphatidylinositol 4-kina... NM_001198775.3 60.3% 60.3% 0_1ins951;1452_1453insGTG
18 mouse 107650 Pi4kb phosphatidylinositol 4-kina... NM_175356.3 92.4% 98.3% (many diffs)
19 mouse 107650 Pi4kb phosphatidylinositol 4-kina... NM_001293715.1 90.7% 96.5% (many diffs)
20 mouse 107650 Pi4kb phosphatidylinositol 4-kina... NM_001293716.1 55.9% 60.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
72
ORF end:
2478
ORF length:
2406
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcac catgggagat acagtagtgg agcctgcccc cttgaagcca acttctgagc
121ccacttctgg cccaccaggg aataatgggg ggtccctgct aagtgtcatc acggaggggg
181tcggggaact atcagtgatt gaccctgagg tggcccagaa ggcctgccag gaggtgttgg
241agaaagtcaa gcttttgcat ggaggcgtgg cagtctctag cagaggcacc ccactggagt
301tggtcaatgg ggatggtgtg gacagtgaga tccgttgcct agatgatcca cctgcccaga
361tcagggagga ggaagatgag atgggggccg ctgtggcctc aggcacagcc aaaggagcaa
421gaagacggcg gcagaacaac tcagctaaac agtcttggct gctgaggctg tttgagtcaa
481aactgtttga catctccatg gccatttcat acctgtataa ctccaaggag cctggagtac
541aagcctacat tggcaaccgg ctcttctgct ttcgcaacga ggacgtggac ttctatctgc
601cccagttgct taacatgtac atccacatgg atgaggacgt gggtgatgcc attaagccct
661acatagtcca ccgttgccgc cagagcatta acttttccct ccagtgtgcc ctgttgcttg
721gggcctattc ttcagacatg cacatttcca ctcaacgaca ctcccgtggg accaagctac
781ggaagctgat cctctcagat gagctaaagc cagctcacag gaagagggag ctgccctcct
841tgagcccggc ccctgataca gggctgtctc cctccaaaag gactcaccag cgctctaagt
901cagatgccac tgccagcata agtctcagca gcaacctgaa acgaacagcc agcaacccta
961aagtggagaa tgaggatgag cctgttcgac tggctcctga gagagaattc atcaagtccc
1021tgatggcgat cggcaagcgg ctggccacgc tccccaccaa agagcagaaa acacagaggc
1081tgatctcaga gctctccctg ctcaaccata agctccctgc ccgagtctgg ctgcccactg
1141ctggctttga ccaccacgtg gtccgtgtac cccacacaca ggctgttgtc ctcaactcca
1201aggacaaggc tccctacctg atttatgtgg aagtccttga atgtgaaaac tttgacacca
1261ccagtgtccc tgcccggatc cccgagaacc gaattcggag tacgaggtcc gtagaaaact
1321tgcccgaatg tggtattacc catgagcagc gagctggcag cttcagcact gtgcccaact
1381atgacaacga tgatgaggcc tggtcggtgg atgacatagg cgagctgcaa gtggagctcc
1441ccgaagtgca taccaacagc tgtgacaaca tctcccagtt ctctgtggac agcatcacca
1501gccaggagag caaggagcct gtgttcattg cagcagggga catccgccgg cgcctttcgg
1561aacagctggc tcataccccg acagccttca aacgagaccc agaagatcct tctgcagttg
1621ctctcaaaga gccctggcag gagaaagtac ggcggatcag agagggctcc ccctacggcc
1681atctccccaa ttggcggctc ctgtcagtca ttgtcaagtg tggggatgac cttcggcaag
1741agcttctggc ctttcaggtg ttgaagcaac tgcagtccat ttgggaacag gagcgagtgc
1801ccctttggat caagccatac aagattcttg tgatttcggc tgatagtggc atgattgaac
1861cagtggtcaa tgctgtgtcc atccatcagg tgaagaaaca gtcacagctc tccttgctcg
1921attacttcct acaggagcac ggcagttaca ccactgaggc attcctcagt gcacagcgca
1981attttgtgca aagttgtgct gggtactgct tggtctgcta cctgctgcaa gtcaaggaca
2041gacacaatgg gaatatcctt ttggacgcag aaggccacat catccacatc GACTTTGGCT
2101TCATCCTCTC CAGCTCACCC CGAAATCTGG GCTTTGAGAC GTCAGCCTTT AAGCTGACCA
2161CAGAGTTTGT GGATGTGATG GGCGGCCTGG ATGGCGACAT GTTCAACTAC TATAAGATGC
2221TGATGCTGCA AGGGCTGATT GCCGCTCGGA AACACATGGA CAAGGTGGTG CAGATCGTGG
2281AGATCATGCA GCAAGGTTCT CAGCTTCCTT GCTTCCATGG CTCCAGCACC ATTCGAAACC
2341TCAAAGAGAG GTTCCACATG AGCATGACTG AGGAGCAGCT GCAGCTGCTG GTGGAGCAGA
2401TGGTGGATGG CAGTATGCGG TCTATCACCA CCAAACTCTA TGACGGCTTC CAGTACCTCA
2461CCAACGGCAT CATGGTGTGA GACCCAGCTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
2521CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
2581AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGATGAC GCCTGTCAGC
2641CCGTTTCTCG ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)