Construct: ORF TRCN0000491290

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016664.1_s317c1
Derived from:
ccsbBroadEn_08375
DNA Barcode:
CATCCCTAGGTAATGCTTTCTCGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SSH1 (54434)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000491290
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54434 SSH1 slingshot protein phosphata... NM_018984.4 99.9% 99.9% 5C>T;2805C>T;2865A>G
2 human 54434 SSH1 slingshot protein phosphata... XM_005268984.4 98.3% 97.9% (many diffs)
3 human 54434 SSH1 slingshot protein phosphata... XM_017019491.2 97% 96.6% (many diffs)
4 human 54434 SSH1 slingshot protein phosphata... XM_011538497.1 96.2% 94.6% (many diffs)
5 human 54434 SSH1 slingshot protein phosphata... XM_005268985.2 92.3% 92.3% 0_1ins240;2565C>T;2625A>G
6 human 54434 SSH1 slingshot protein phosphata... XM_011538500.3 92.3% 92.3% 0_1ins240;2565C>T;2625A>G
7 human 54434 SSH1 slingshot protein phosphata... XM_011538501.3 92.3% 92.3% 0_1ins240;2565C>T;2625A>G
8 human 54434 SSH1 slingshot protein phosphata... XM_011538499.1 89.9% 88.3% (many diffs)
9 human 54434 SSH1 slingshot protein phosphata... XM_017019492.1 87.6% 87.2% (many diffs)
10 human 54434 SSH1 slingshot protein phosphata... XM_017019493.1 70.1% 68.4% (many diffs)
11 human 54434 SSH1 slingshot protein phosphata... XM_017019494.1 70.1% 68.4% (many diffs)
12 human 54434 SSH1 slingshot protein phosphata... NM_001161330.2 64.3% 61.1% (many diffs)
13 human 54434 SSH1 slingshot protein phosphata... NM_001161331.1 61.3% 56.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3213
ORF length:
3147
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggt cctggtgacc ctgcagcgct cgcccacgcc cagcgccgcc tcctcctcgg
121ccagcaacag cgagttggag gctggcagcg aagaagatcg aaaattaaac ctcagcttaa
181gtgagagctt tttcatggtg aaaggcgcag ccctcttctt acaacaggga agcagccctc
241aaggccagcg gagtcttcag cacccccaca agcatgcagg tgatctgcct caacatcttc
301aggtgatgat caaccttctg cgttgcgaag acagaatcaa gctggcagtg cgcctggaga
361gcgcctgggc ggaccgggtc cggtacatgg tggtggtgta cagcagcggg cgccaggaca
421ccgaggagaa tatcttgctg ggagtggact tttccagtaa ggaaagtaaa agctgcacca
481ttgggatggt tctccgactg tggagcgaca cgaaaatcca ccttgatgga gatggtgggt
541tcagcgtgag cacagcagga aggatgcaca tatttaagcc tgtgtctgtc caggccatgt
601ggtctgccct gcaggtgctt cacaaggcct gcgaagtggc ccggaggcac aactacttcc
661ccgggggtgt agctctcatc tgggctacct actatgagag ctgcatcagc tccgagcaga
721gctgcatcaa cgagtggaac gccatgcagg acctggagtc tacgcggccc gactcccccg
781cgctatttgt ggacaagccc actgaagggg aaaggaccga gcgcctcatc aaagccaagc
841tccgaagcat catgatgagc caggatctag aaaatgtgac ttccaaagag attcgtaatg
901aattagagaa acagatgaat tgtaacttga aggaactcaa ggaatttata gacaatgaga
961tgctacttat cttgggacag atggacaagc cctcccttat cttcgatcat ctttatctcg
1021gctctgaatg gaatgcatcc aatctggagg aactgcaggg ctcaggggtt gattacattt
1081taaatgttac cagagaaatc gataattttt ttcctggctt atttgcatat cataacatcc
1141gagtctacga tgaagagacc acagacctcc tcgcccactg gaatgaagcg tatcatttta
1201taaacaaagc gaagaggaac cattccaagt gcctggtgca ttgcaaaatg ggcgtgagtc
1261gctcggcctc cacagtcata gcctatgcaa tgaaggaatt cggctggcct ctggaaaaag
1321catataacta tgtaaagcag aagcgcagca tcacgcgccc caacgcgggc tttatgaggc
1381agctgtctga gtatgaaggc atcttggatg caagcaaaca gcggcacaac aagctgtggc
1441gtcagcagac agacagcagc ctccagcagc ctgtggatga ccctgcagga cctggcgact
1501tcttgccaga gaccccagat ggcaccccgg aaagccagct gcccttcttg gatgatgccg
1561cccagcccgg cttagggccc cccctcccct gctgtttccg gcgactctca gacccccttc
1621tgccttcccc tgaggatgaa actggcagct tggtccacct ggaggatccg gagagggagg
1681ctctgttgga ggaagctgct ccacctgcag aggtgcacag gccggccaga cagccccagc
1741aaggttccgg actctgtgag aaggatgtga agaagaaact agagtttggg agtcccaaag
1801gtcggagcgg ctccttgctg caggtggagg agacggaaag ggaggagggc ctgggagcag
1861ggaggtgggg gcagcttcca acccagctcg atcaaaacct gctcaactcg gagaacctaa
1921acaacaacag caagaggagc tgtcccaacg gcatggagga tgatgctata tttgggatcc
1981ttaacaaagt gaagccttcc tataaatcct gtgccgactg catgtaccct acagccagcg
2041gggctcctga ggcctccagg gagcgatgtg aggaccccaa tgctcccgcc atctgcaccc
2101agccagcctt cctaccccac atcacgtcct cccctgtggc ccacttggcc agcaggtccc
2161gtgttccgga gaagccagcc tctggcccaa ccgaacctcc cccgttccta ccaccagcag
2221gctccaggag ggcagacacc agtggccctg gggctggagc tgccctagag ccaccagcca
2281gccttttgga accttccaga gagaccccaa aagtcctgcc aaagtccctc cttttgaaga
2341attctcactg tgataagaac cctcccagca cagaagtggt aataaaggaa gaatcgtcac
2401ccaagaaaga tatgaagcca gccaaggacc tgaggcttct gttcagtaat gaatctgaga
2461agccgacaac caacagctac ctgatgcagc accaggagtc catcattcag ctgcagaagg
2521caggcttggt ccgcaagcac accaaagagc tagagcggct gaagagcgtg cctgcagacc
2581cagcacctcc ctccagggat ggccctgcca gcaggctgga ggccagcatc cccgaggaga
2641gccaggatcc agccgcgctc cacgagctgg gccccctggt tatgcccagc caggccggga
2701gtgatgagaa gtcagaggcc gcccccgctt cattggaagg aggctcactg aagagccccc
2761ctcctttctt ctaccgcctg gaccacacca gtagtttctc aaaagacttt ctgaagacca
2821tctgctacac ccccacctcc tcttccatga gctccaacct gacccggagt tccagcagcg
2881atagcatcca cagtgtccgt gggaagcccg ggctggtgaa gcagcggacg caggagattg
2941agacccggcT CCGGCTGGCG GGCCTCACCG TCTCTTCCCC ACTGAAGCGC TCACACTCTC
3001TTGCCAAGCT GGGGAGTCTC ACCTTCTCAA CGGAAGACCT GTCCAGTGAG GCTGACCCGT
3061CCACCGTCGC TGACTCCCAG GACACCACTT TGAGTGAATC TTCCTTCTTG CATGAGCCCC
3121AGGGAACCCC GAGGGACCCA GCTGCAACCT CCAAACCATC AGGGAAACCC GCCCCAGAAA
3181ACTTAAAGAG CCCTTCGTGG ATGAGCAAAA GCTGCCCAAC TTTCTTGTAC AAAGTGGTTG
3241ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA
3301GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGACA
3361TCCCTAGGTA ATGCTTTCTC GAACGCGTTA AGTCgacaat caacctctgg attacaaaat
3421ttgtgaaaga tt

Download FASTA (ORF) (Full)

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