Construct: ORF TRCN0000491499

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009155.1_s317c1
Derived from:
ccsbBroadEn_14236
DNA Barcode:
GCGGTGGAGGTTTGCACTACCTTT
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
WDR19 (57728)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000491499
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57728 WDR19 WD repeat domain 19 XR_001741312.1 52.2% (many diffs)
2 human 57728 WDR19 WD repeat domain 19 NM_025132.4 32.4% 31.3% (many diffs)
3 human 57728 WDR19 WD repeat domain 19 XM_011513724.1 32.3% 31.2% (many diffs)
4 human 57728 WDR19 WD repeat domain 19 XM_011513725.2 30.7% 29.6% (many diffs)
5 human 57728 WDR19 WD repeat domain 19 XR_001741307.1 28.2% (many diffs)
6 human 57728 WDR19 WD repeat domain 19 XR_001741306.1 28.1% (many diffs)
7 human 57728 WDR19 WD repeat domain 19 XR_001741309.1 21.5% (many diffs)
8 human 57728 WDR19 WD repeat domain 19 XR_925155.1 21.5% (many diffs)
9 human 57728 WDR19 WD repeat domain 19 XR_001741310.1 20.8% (many diffs)
10 human 57728 WDR19 WD repeat domain 19 XR_001741308.1 20.8% (many diffs)
11 human 57728 WDR19 WD repeat domain 19 NM_001317924.2 20.5% 19.4% (many diffs)
12 human 57728 WDR19 WD repeat domain 19 XM_017008501.1 20.5% 19.4% (many diffs)
13 human 57728 WDR19 WD repeat domain 19 XM_011513726.3 20.4% 19.3% (many diffs)
14 human 57728 WDR19 WD repeat domain 19 XM_011513727.1 20.4% 19.3% (many diffs)
15 human 57728 WDR19 WD repeat domain 19 XR_001741311.2 19.7% (many diffs)
16 mouse 213081 Wdr19 WD repeat domain 19 NM_153391.2 28.2% 26.9% (many diffs)
17 mouse 213081 Wdr19 WD repeat domain 19 XM_011240713.1 28.2% 26.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1365
ORF length:
1299
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgaa gcgtattttc tcactgctag aaaagacttg gcttggcgca ccaatacagt
121ttgcctggca aaaaacatca ggaaactacc ttgcagtaac aggagctgat tatattgtga
181aaatctttga tcgccatggt caaaaaagaa gtgaaattaa cttacctggt aactgtgttg
241ccatggattg ggataaagat ggagatgtcc tagcagtgat tgctgagaaa tctagctgca
301tttatctttg ggatgccaac acaaataaga ccagccagtt agacaatggc atgagggatc
361aaatgtcttt ccttctttgg tcaaaagttg gaagtttcct ggctgttgga actgttaaag
421gaaatttgct tatttataat catcagacat ctcgaaagat tcctgtcctt ggaaaacata
481ctaagagaat cacttgtgga tgttggaatg cagaaaatct gcttgcttta ggtggtgaag
541ataaaatgat tacagttagt aatcaggaag gtgacacgat aagacagaca caagtgagat
601cagagcctag caacatgcag tttttcttga tgaagatgga tgaccgaacc tctgctgctg
661aaagcatgat aagtgtggtg cttggcaaga aaactttgtt ttttttaaat ctgaatgaac
721cagataaccc agctgatctt gaatttcagc aggactttgg caacattgtc tgctataatt
781ggtatggtga tggccgcatc atgattggtt tttcatgtgg acattttgtg gtcatttcta
841ctcatactgg agagcttggt caagagatat ttcaggctcg taaccataaa gataatctaa
901ccagcattgc agtatcacag actcttaaca aagttgctac atgtggagat aactgtatta
961aaatccaaga cttggttgac ttaaaagaca tgtatgttat actcaacctG GATGAGGAAA
1021ATAAAGGATT GGGTACCTTG TCCTGGACTG ATGATGGCCA GTTGCTAGCA CTCTCTACCC
1081AAAGGGGCTC ACTTCATGTT TTCCTGACCA AGCTTCCCAT ACTTGGGGAT GCCTGCAGCA
1141CAAGGATTGC CTATCTCACC TCCCTCCTTG AAGTCACCGT AGCCAACCCT GTTGAAGGAG
1201AGCTACCAAT CACAGTTTCT GTTGATGTGG AACCCAACTT TGTGGCAGTA GGTCTTTATC
1261ATCTGGCTGT AGGAATGAAT AATCGAGCTT GGTTTTATGT CCTTGGAGAA AATGCTGTGA
1321AAAAAATTGA AAGATATGGA GTATCTGGGA ACAGTAGCCA GTATTAGCCT TCATGCTGCC
1381CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
1441TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
1501ATATATCTTG TGGAAAGGAC GAGCGGTGGA GGTTTGCACT ACCTTTACGC GTTAAGTCga
1561caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)