Construct: ORF TRCN0000491552
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF019655.2_s317c1
- DNA Barcode:
- TCAGTGGTGGGACCCTCATGATGT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OR13A1 (79290)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000491552
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79290 | OR13A1 | olfactory receptor family 1... | NM_001004297.3 | 94.1% | 93.9% | 1_57del;984_985insG |
| 2 | human | 79290 | OR13A1 | olfactory receptor family 1... | XM_011540147.3 | 94.1% | 93.9% | 1_57del;984_985insG |
| 3 | human | 79290 | OR13A1 | olfactory receptor family 1... | XM_017016632.2 | 94.1% | 93.9% | 1_57del;984_985insG |
| 4 | human | 79290 | OR13A1 | olfactory receptor family 1... | XM_017016633.2 | 94.1% | 93.9% | 1_57del;984_985insG |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 75
- ORF end:
- 1005
- ORF length:
- 930
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcgc caccatgatg agtaaccaga cgttggtaac cgagttcatc ctgcagggct 121 tttcggagca cccagaatac cgggtgttct tattcagctg tttcctcttc ctctactctg 181 gggccctcac aggtaatgtc ctcatcacct tggccatcac gttcaaccct gggctccacg 241 ctcctatgta ctttttctta ctcaacttgg ctactatgga cattatctgc acctcttcca 301 tcatgcccaa ggcgctggcc agtctggtgt cggaagagag ctccatctcc tacgggggct 361 gcatggccca gctctatttc ctcacgtggg ctgcatcctc agagctgctg ctcctcacgg 421 tcatggccta tgaccggtac gcagccatct gccacccgct gcattacagc agcatgatga 481 gcaaggtgtt ctgcagcggg ctggccacag ccgtgtggct gctctgcgcc gtcaacacgg 541 ccatccacac ggggctgatg ctgcgcttgg atttctgtgg ccccaatgtc attatccatt 601 tcttctgcga ggtccctccc ctgctgcttc tctcctgcag ctccacctac gtcaacggtg 661 tcatgattgt cctggcggat gctttctacg gcatagtgaa cttccTGATG ACCATCGCGT 721 CCTATGGCTT CATCGTCTCC AGCATCCTGA AGGTGAAGAC TGCCTGGGGG AGGCAGAAAG 781 CCTTCTCCAC CTGCTCTTCC CACCTCACCG TGGTGTGCAT GTATTACACC GCTGTCTTCT 841 ACGCCTACAT AAGCCCGGTC TCTGGCTACA GCGCAGGGAA GAGCAAGTTG GCTGGCCTGC 901 TGTACACTGT GCTGAGTCCT ACCCTCAACC CCCTCATCTA TACTTTGAGA AACAAGGAGG 961 TCAAAGCAGC CCTCAGGAAG CTTTTCCCTT TCTTCAGAAA TGACCCAGCT TTCTTGTACA 1021 AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT 1081 AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA 1141 AGGACGATCA GTGGTGGGAC CCTCATGATG TACGCGTTAA GTCgacaatc aacctctgga 1201 ttacaaaatt tgtgaaagat t