Construct: ORF TRCN0000491562

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010355.2_s317c1
Derived from:
ccsbBroadEn_06987
DNA Barcode:
GGTCACGCCCGACAAAGTAAGCAA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SPAM1 (6677)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000491562
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6677 SPAM1 sperm adhesion molecule 1 NM_003117.5 99.9% 100% 582G>A
2 human 6677 SPAM1 sperm adhesion molecule 1 NM_001174044.2 97.2% 97.2% (many diffs)
3 human 6677 SPAM1 sperm adhesion molecule 1 NM_001174045.1 97.2% 97.2% (many diffs)
4 human 6677 SPAM1 sperm adhesion molecule 1 NM_001174046.1 97.2% 97.2% (many diffs)
5 human 6677 SPAM1 sperm adhesion molecule 1 NM_153189.3 97.2% 97.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1599
ORF length:
1533
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggg agtgctaaaa ttcaagcaca tctttttcag aagctttgtt aaatcaagtg
121gagtatccca gatagttttc accttccttc tgattccatg ttgcttgact ctgaatttca
181gagcacctcc tgttattcca aatgtgcctt tcctctgggc ctggaatgcc ccaagtgaat
241tttgtcttgg aaaatttgat gagccactag atatgagcct cttctctttc ataggaagcc
301cccgaataaa cgccaccggg caaggtgtta caatatttta tgttgataga cttggctact
361atccttacat agattcaatc acaggagtaa ctgtgaatgg aggaatcccc cagaagattt
421ccttacaaga ccatctggac aaagctaaga aagacattac attttatatg ccagtagaca
481atttgggaat ggctgttatt gactgggaag aatggagacc cacttgggca agaaactgga
541aacctaaaga tgtttacaag aataggtcta ttgaattggt tcagcaacaa aatgtacaac
601ttagtctcac agaggccact gagaaagcaa aacaagaatt tgaaaaagca gggaaggatt
661tcctggtaga gactataaaa ttgggaaaat tacttcggcc aaatcacttg tggggttatt
721atctttttcc ggattgttac aaccatcact ataagaaacc cggttacaat ggaagttgct
781tcaatgtaga aataaaaaga aatgatgatc tcagctggtt gtggaatgaa agcactgctc
841tttacccatc catttatttg aacactcagc agtctcctgt agctgctaca ctctatgtgc
901gcaatcgagt tcgggaagcc atcagagttt ccaaaatacc tgatgcaaaa agtccacttc
961cggtttttgc atatacccgc atagttttta ctgatcaagt tttgaaattc ctttctcaag
1021atgaacttgt gtatacattt ggcgaaactg ttgctctggg tgcttctgga attgtaatat
1081ggggaaccct cagtataatg cgaagtatga aatcttgctt gctcctagac aattacatgg
1141agactatact gaatccttac ataatcaacg tcacactagc agccaaaatG TGTAGCCAAG
1201TGCTTTGCCA GGAGCAAGGA GTGTGTATAA GGAAAAACTG GAATTCAAGT GACTATCTTC
1261ACCTCAACCC AGATAATTTT GCTATTCAAC TTGAGAAAGG TGGAAAGTTC ACAGTACGTG
1321GAAAACCGAC ACTTGAAGAC CTGGAGCAAT TTTCTGAAAA ATTTTATTGC AGCTGTTATA
1381GCACCTTGAG TTGTAAGGAG AAAGCTGATG TAAAAGACAC TGATGCTGTT GATGTGTGTA
1441TTGCTGATGG TGTCTGTATA GATGCTTTTC TAAAACCTCC CATGGAGACA GAAGAACCTC
1501AAATTTTCTA CAATGCTTCA CCCTCCACAC TATCTGCCAC AATGTTCATT TGGAGGCTGG
1561AAGTCTGGGA TCAAGGTATT AGCAGAATTG GTTTCTTCCG CCCAACTTTC TTGTACAAAG
1621TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT
1681GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG
1741ACGAGGTCAC GCCCGACAAA GTAAGCAAAC GCGTTAAGTC gacaatcaac ctctggatta
1801caaaatttgt gaaagatt

Download FASTA (ORF) (Full)