Construct: ORF TRCN0000491609

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016140.2_s317c1
Derived from:
ccsbBroadEn_15228
DNA Barcode:
ACCGTTTCGCCACGCAATTAGTAT
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
BATF2 (116071)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000491609
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 116071 BATF2 basic leucine zipper ATF-li... NM_001300808.1 99.4% 6.8% 18_19insN;21_22delAGinsNN
2 human 116071 BATF2 basic leucine zipper ATF-li... NM_001300807.1 75.2% 5.2% 1_183del;201_202insN;204_205delAGinsNN
3 human 116071 BATF2 basic leucine zipper ATF-li... NM_138456.4 68.6% 4.7% 1_255del;273_274insN;276_277delAGinsNN
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
120
ORF length:
54
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga ttgtgcctcc tgcntcnnct ccagggctcc tgggctgctg ggaccaggct
121gaggggctcc tgggccctgg cccacaggga caacatggct gccgggagca gctggagctg
181ttccagaccc cgggttcctg ttacccagct cagccgctct ctccaggtcc acagcctcat
241gattctccca gcctcctcca gtgccccctg ccctcactgt cccttggccc cgctgtggtt
301gctgaaccTC CTGTCCAGCT GTCCCCCAGC CCTCTCCTGT TTGCCTCGCA CACTGGTTCC
361AGCCTGCAGG GGTCTTCCTC TAAGCTCAGT GCCCTCCAGC CCAGCCTCAC GGCCCAAACT
421GCCCCTCCAC AGCCCCTCGA GCTGGAGCAT CCCACCAGAG GGAAGCTGGG GTCCTCTCCC
481GACAACCCTT CCTCTGCCCT GGGGCTTGCA CGTCTGCAGA GCAGGGAGCA CAAACCTGCT
541CTCTCAGCAG CCACTTGGCA AGGGCTGGTT GTGGATCCCA GCCCTCACCC TCTCCTGGCC
601TTTCCTCTGC TCTCCTCTGC TCAAGTCCAC TTCTACCCAA CTTTCTTGTA CAAAGTGGTT
661GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT
721AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAA
781CCGTTTCGCC ACGCAATTAG TATACGCGTT AAGTCgacaa tcaacctctg gattacaaaa
841tttgtgaaag att

Download FASTA (ORF) (Full)