Construct: ORF TRCN0000491873
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF019250.2_s317c1
- DNA Barcode:
- TGGGCAGGTCTAAACACGTTAGGA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NMUR1 (10316)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000491873
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10316 | NMUR1 | neuromedin U receptor 1 | NM_006056.5 | 100% | 100% | |
| 2 | human | 10316 | NMUR1 | neuromedin U receptor 1 | XM_011510487.3 | 94.6% | 94.6% | 0_1ins69 |
| 3 | human | 10316 | NMUR1 | neuromedin U receptor 1 | XM_006712195.3 | 79.6% | 73% | (many diffs) |
| 4 | human | 10316 | NMUR1 | neuromedin U receptor 1 | XM_011510488.2 | 77.5% | 71.1% | (many diffs) |
| 5 | human | 10316 | NMUR1 | neuromedin U receptor 1 | XM_006712196.3 | 74% | 70.5% | (many diffs) |
| 6 | human | 10316 | NMUR1 | neuromedin U receptor 1 | XM_011510489.2 | 72.9% | 71.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 75
- ORF end:
- 1353
- ORF length:
- 1278
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcgc caccatgact cctctctgcc tcaattgctc tgtcctccct ggagacctgt 121 acccaggggg tgcaaggaac cccatggctt gcaatggcag tgcggccagg gggcactttg 181 accctgagga cttgaacctg actgacgagg cactgagact caagtacctg gggccccagc 241 agacagagct gttcatgccc atctgtgcca catacctgct gatcttcgtg gtgggcgctg 301 tgggcaatgg gctgacctgt ctggtcatcc tgcgccacaa ggccatgcgc acgcctacca 361 actactacct cttcagcctg gccgtgtcgg acctgctggt gctgctggtg ggcctgcccc 421 tggagctcta tgagatgtgg cacaactacc ccttcctgct gggcgttggt ggctgctatt 481 tccgcacgct actgtttgag atggtctgcc tggcctcagt gctcaacgtc actgccctga 541 gcgtggaacg ctatgtggcc gtggtgcacc cactccaggc caggtccatg gtgacgcggg 601 cccatgtgcg ccgagtgctt ggggccgtct ggggtcttgc catgctctgc tccctgccca 661 acaccagcct gcacggcatc cggcagctgc acgtgccctg ccggggccca gtgccagact 721 cagctgtttg catgctggtc cgcccacggg ccctctacaa catggtagtg cagaccaccg 781 cgctgctctt cttctgcctg cccatggcca tcatgagcgt gctctacctg ctcattgggc 841 tgcgactgcg gcgggagagg ctgctgctca tgcaggaggc caagggcagg ggctctgcag 901 cagccaggtc cagatacacc tgcaggctcc agcagcacga tcggggccgg agacaagtga 961 ccaagatgct gtttgtcctg gtcgtggtgt ttggcatctg ctgggccccg ttccacgccg 1021 accgcgtcat gtggagcgtc gtgtcacagt ggacagatgg cctgcacctg gccttccagc 1081 acgtgcacgt catctccggc atcttcttct acctgggctc ggcggccaac cccgtgctct 1141 atagccTCAT GTCCAGCCGC TTCCGAGAGA CCTTCCAGGA GGCCCTGTGC CTCGGGGCCT 1201 GCTGCCATCG CCTCAGACCC CGCCACAGCT CCCACAGCCT CAGCAGGATG ACCACAGGCA 1261 GCACCCTGTG TGATGTGGGC TCCCTGGGCA GCTGGGTCCA CCCCCTGGCT GGGAACGATG 1321 GCCCAGAGGC GCAGCAAGAG ACCGATCCAT CCGACCCAGC TTTCTTGTAC AAAGTGGTTG 1381 ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA 1441 GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGATG 1501 GGCAGGTCTA AACACGTTAG GAACGCGTTA AGTCgacaat caacctctgg attacaaaat 1561 ttgtgaaaga tt