Construct: ORF TRCN0000491955
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF019154.2_s317c1
- DNA Barcode:
- CGAATGCTTAAAGCGTTGAGTACA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SSTR3 (6753)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000491955
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6753 | SSTR3 | somatostatin receptor 3 | NM_001051.5 | 99.6% | 99.7% | (many diffs) |
| 2 | human | 6753 | SSTR3 | somatostatin receptor 3 | NM_001278687.2 | 99.6% | 99.7% | (many diffs) |
| 3 | human | 6753 | SSTR3 | somatostatin receptor 3 | XM_005261721.4 | 99.6% | 99.7% | (many diffs) |
| 4 | human | 6753 | SSTR3 | somatostatin receptor 3 | XM_006724311.3 | 99.6% | 99.7% | (many diffs) |
| 5 | human | 6753 | SSTR3 | somatostatin receptor 3 | XM_011530349.2 | 99.6% | 99.7% | (many diffs) |
| 6 | human | 6753 | SSTR3 | somatostatin receptor 3 | XM_017028923.1 | 99.6% | 99.7% | (many diffs) |
| 7 | human | 6753 | SSTR3 | somatostatin receptor 3 | XM_017028924.1 | 99.6% | 99.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 75
- ORF end:
- 1332
- ORF length:
- 1257
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcgc caccatggac atgcttcatc catcatcggt gtccacgacc tcagaacctg 121 agaatgcctc ctcggcctgg cccccagatg ccaccctggg caacgtgtcg gcaggcccaa 181 gcccggcagg gctggccgtc agtggcgttc tgatccccct ggtctacctg gtggtgtgcg 241 tggtgggcct gctgggtaac tcgctggtca tctatgtggt cctgcggcac acggccagcc 301 cttcagtcac caacgtctac atcctcaacc tggcgctggc cgacgagctc ttcatgctgg 361 ggctgccctt cctggccgcc cagaacgccc tgtcctactg gcccttcggc tccctcatgt 421 gccgcctggt catggcggtg gatggcatca accagttcac cagcatattc tgcctgactg 481 tcatgagcgt ggaccgctac ctggccgtgg tacatcccac ccgctcagcc cgctggcgca 541 cagctccggt ggcccgcacg gtcagcgcgg ctgtgtgggt ggcctcagcc gtggtggtgc 601 tgcccgtggt ggtcttctcg ggagtgcccc gcggcatgag cacctgccac atgcagtggc 661 ccgagccggc ggcggcctgg cgagccggct tcatcatcta cacggccgca ctgggcttct 721 tcgggccgct gctggtcatc tgcctctgct acctgctcat cgtggtgaag gtgcgctcag 781 ctgggcgccg ggtgtgggca ccctcgtgcc agcggcggcg gcgctccgaa cgcagggtca 841 cgcgcatggt ggtggccgtg gtggcactct tcgtgctctg ctggatgccc ttctatgtgc 901 tcaacatcgt caacgtggtg tgcccactgc ccgaggagcc tgccttcttt gggctctact 961 tccTGGTGGT GGCGCTGCCC TATGCCAACA GCTGTGCCAA CCCCATCCTT TATGGCTTCC 1021 TCTCCTACCG CTTCAAGCAG GGCTTCCGCA GGGTCCTGCT GCGGCCCTCC CGCCGTGTGC 1081 GCAGCCAGGA GCCCACTGTG GGGCCCCCGG AGAAGACTGA GGAGGAGGAT GAGGAGGAGG 1141 AGGATGGGGA GGAGAGCAGG GAGGGGGGCA AGGGGAAGGA GATGAACGGC CGGGTCAGCC 1201 AGATCACGCA GCCTGGCACC AGCGGGCAGG AGCGGCCGCC CAGCAGAGTG GCCAGCAAGG 1261 AGCAGCAGCT CCTACCCCAA GAGGCTTCCA CTGGGGAGAA GTCCAGCACG ATGCGCATCA 1321 GCTACCTGGA CCCAGCTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC 1381 CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA 1441 TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGACGAATG CTTAAAGCGT TGAGTACAAC 1501 GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt