Construct: ORF TRCN0000492043
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF021688.2_s317c1
- DNA Barcode:
- CGTGCAGAAACTAGCTGGTATTGG
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- MERTK (10461)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000492043
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10461 | MERTK | MER proto-oncogene, tyrosin... | NM_006343.3 | 46.2% | 1_1612del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 190
- ORF end:
- 196
- ORF length:
- 6
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac agaggaggat tctgaattag tggtgaatta tatagcaaag aaatccttct 121 gtcggcgagc cattgaactt accttacata gcttgggagt cagtgaggaa ctacaaaata 181 aactagaaga tgttgtgatt gacaggaatc ttctaattct tggaaaaatt ctgggtgaag 241 gagagtttgg gtctgtaatg gaaggaaatc ttaagcagga agatgggacc tctctgaaag 301 tggcagtgaa gaccatgaag ttggacaact cttcacagcg ggagatcgag gagtttctca 361 gtgaggcagc gtgcatgaaa gacttcagcc acccaaatgt cattcgactt ctaggtgtgt 421 gtatagaaat gagctctcaa ggcatcccaa agcccatggt aattttaccc ttcatgaaat 481 acggggacct gcatacttac ttactttatt cccgattgga gacaggacca aagcatattc 541 ctctgcagac actattgaag ttcatggtgg atattgccct gggaatggag tatctgagca 601 acaggaattt tcttcatcga gatttagctg ctcgaaactg catgttgcga gatgacatga 661 ctgtctgtgt tgcggacttc ggcctctcta agaagattta cagtggcgat tattaccgcc 721 aaggccgcat tgctaagatg cctgttaaat ggatcgccat agaaagtctt gcagaccgag 781 tctacacaag taaaagtgat gtgtgggcat ttggcgtgac catgtgggaa atagctacgc 841 ggggaatgac tccctatcct ggggtccaga accatgagat gtatgactat cttctccatg 901 gccacaggtt gaagcagccc gaagactgcc tggatgaact gtatgaaata atgtactctt 961 gctggagaac cgatccctta gaccgcccca ccttttcagt attgaggctg cagctagaaa 1021 aactcttaga aagtttgcct gacgttcgga accaagcaga cgttatttac gtcaatacac 1081 agttgctgga gagctctgag ggcctggccc agggctccac ccttgctcca ctggacttgA 1141 ACATCGACCC TGACTCTATA ATTGCCTCCT GCACTCCCCG CGCTGCCATC AGTGTGGTCA 1201 CAGCAGAAGT TCATGACAGC AAACCTCATG AAGGACGGTA CATCCTGAAT GGGGGCAGTG 1261 AGGAATGGGA AGATCTGACT TCTGCCCCCT CTGCTGCAGT CACAGCTGAA AAGAACAGTG 1321 TTTTACCGGG GGAGAGACTT GTTAGGAATG GGGTCTCCTG GTCCCATTCG AGCATGCTGC 1381 CCTTGGGAAG CTCATTGCCC GATGAACTTT TGTTTGCTGA CGACTCCTCA GAAGGCTCAG 1441 AAGTCCTGAT GTGAGACCCA GCTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC 1501 CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA 1561 TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA CGTGCAGAAA CTAGCTGGTA 1621 TTGGACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt