Construct: ORF TRCN0000492352

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004469.1_s317c1
Derived from:
ccsbBroadEn_13580
DNA Barcode:
GTAGGAGCAACTAACCATCTCGGG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ANKRD42 (338699)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000492352
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 338699 ANKRD42 ankyrin repeat domain 42 NM_001300977.2 100% 100%
2 human 338699 ANKRD42 ankyrin repeat domain 42 NM_001300976.2 85.7% 84.7% 587_595delGTGGCAGCCinsA;597T>C;603_690del
3 human 338699 ANKRD42 ankyrin repeat domain 42 NM_182603.4 40.6% 40% (many diffs)
4 human 338699 ANKRD42 ankyrin repeat domain 42 NM_001300972.2 39.3% 38.8% (many diffs)
5 human 338699 ANKRD42 ankyrin repeat domain 42 NM_001300973.2 37.9% 37.4% (many diffs)
6 human 338699 ANKRD42 ankyrin repeat domain 42 NM_001300975.2 37.5% 37% (many diffs)
7 human 338699 ANKRD42 ankyrin repeat domain 42 NR_125355.2 16.8% (many diffs)
8 mouse 73845 Ankrd42 ankyrin repeat domain 42 XM_017312337.1 84.1% 85.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
663
ORF length:
594
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gcccggggtg gccaattcag gcccctccac ttcctctagg gagactgcaa
121acccctgttc caggaagaag gtgcattttg gcagcataca tgatgcagta cgagctggag
181atgtaaagca gctttcagaa atagtggtac gtggagccag cattaatgaa cttgatgttc
241tccataagtt taccccttta cattgggcag cacattctgg aagtttggag tgtcttcatt
301ggctgctctg gcatggagct gatatcacac acgtaacaac gagaggttgg acagcatctc
361acatagctgc aatcaggggt caggatgctt GTGTACAGGC TCTTATAATG AATGGAGCAA
421ATCTGACAGC CCAGGATGAC CGGGGATGCA CTCCTTTACA TCTTGCTGCA ACTCATGGAC
481ATTCTTTCAC TTTACAAATA ATGCTCCGAA GTGGAGTGGA TCCCAGTGTG ACTGATAAGA
541GAGAATGGAG ACCTGTGCAT TATGCAGCTT TTCATGGGCG GCTTGGCTGC TTGCAACTTC
601TTGTTAAATG GGGTTGTAGC ATAGAAGATG TGGACTACAA TGGAAACCTT CCAGAACCTC
661CTTTGCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
721TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
781GGCTTTATAT ATCTTGTGGA AAGGACGAGT AGGAGCAACT AACCATCTCG GGACGCGTTA
841AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)