Construct: ORF ccsbBroad304_00451

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009958.1_s304c1, BRDN0000410771
Derived from:
ccsbBroadEn_00451
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DMRT1 (1761)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_00451
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1761 DMRT1 doublesex and mab-3 related... NM_021951.3 100% 100%
2 human 1761 DMRT1 doublesex and mab-3 related... XM_006716732.1 99.7% 99.7% 819_821delGCA
3 human 1761 DMRT1 doublesex and mab-3 related... XM_011517771.1 77.3% 67.7% (many diffs)
4 human 1761 DMRT1 doublesex and mab-3 related... XM_011517770.1 77.1% 67.6% (many diffs)
5 human 1761 DMRT1 doublesex and mab-3 related... XM_011517772.1 63.9% 46.4% (many diffs)
6 human 1761 DMRT1 doublesex and mab-3 related... NM_001363767.1 57.6% 57.6% 0_1ins474
7 human 1761 DMRT1 doublesex and mab-3 related... XM_017014375.1 57.6% 48.6% 535_536ins284;645_646ins190
8 human 1761 DMRT1 doublesex and mab-3 related... XM_011517773.3 57.4% 57.4% 0_1ins474;345_347delGCA
9 human 1761 DMRT1 doublesex and mab-3 related... XM_024447434.1 51.2% 51.2% 0_1ins546
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1185
ORF length:
1119
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgcc caacgacgag gcattcagca agccctctac accgtcggaa gcccctcacg
121cccccggggt accgccgcag ggcagagccg ggggctttgg caaagcgtct ggggcgctag
181tgggggcggc cagcggctcg agcgccgggg gcagcagcag aggaggcggc tccggctccg
241gggcgtcgga cctgggtgcc gggagcaaga agtccccgcg gctgcccaag tgcgcacgct
301gcaggaacca cggctacgcc tcgccgctca agggccacaa gcgcttctgc atgtggcgcg
361actgccagtg caagaagtgc aacctgatcg ccgagaggca gcgcgtgatg gccgcgcagg
421tggccctgag aaggcagcag gcccaggagg aggaattggg tatcagccac cccatcccac
481tgcccagtgc ggccgagctg cttgtcaaaa gagagaacaa tggcagtaac ccgtgcctca
541tgactgagtg cagtggcacc tctcagccac cgccggccag tgtccccacc actgcagctt
601cagagggacg tatggtcatc caggatattc ctgctgtcac cagcagaggg catgtggaga
661acacacctga cctggtttca gactccacct actacagcag cttctaccag ccgtctctgt
721ttccttatta caacaatcta tacaactgcc cgcagtactc catggccttg gctgctgatt
781ctgcttctgg ggaggtggga aatcccctcg ggggatcccc tgtgaagaac agccttcggg
841gcctccccgg accttatgtg cctggtcaga caggaaacca gtggcagatg aagaacatgg
901agaaccgcca tgcaatgagc tcccagtaca ggatgcattc ttactacccg cctccctctt
961acctgggcca gagcgtgccc cagttcttca cttttgagga tgctccctct tacccggaag
1021ccagggcgag cgtattctcg ccgcccagca gtcaagattc tggcttggtt tccctctcga
1081gcagctctcc tattagtaac aagagcacaa aggcagtgct tgaatgtgag cctgcgtcgg
1141agcccagcag cttcacagtc actcccgtca tcgaggagga cgagtgccca actttcttgt
1201acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat
1261gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a

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