Construct: ORF ccsbBroad304_00532
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007881.1_s304c1, BRDN0000408643
- Derived from:
- ccsbBroadEn_00532
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- F11 (2160)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_00532
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2160 | F11 | coagulation factor XI | NM_000128.4 | 100% | 100% | |
| 2 | human | 2160 | F11 | coagulation factor XI | XM_005262821.4 | 99.8% | 99.6% | 1029_1031delCAG |
| 3 | human | 2160 | F11 | coagulation factor XI | XM_006714137.3 | 97.2% | 97.1% | 863_864ins48;981_983delCAG |
| 4 | human | 2160 | F11 | coagulation factor XI | XM_005262822.4 | 94.7% | 94.5% | 1029_1031delCAG;1481_1482ins96 |
| 5 | human | 2160 | F11 | coagulation factor XI | XM_005262823.4 | 85.4% | 85.3% | 484_485ins270;759_761delCAG |
| 6 | human | 2160 | F11 | coagulation factor XI | XR_001741172.2 | 66.5% | (many diffs) | |
| 7 | human | 2160 | F11 | coagulation factor XI | XM_017007886.2 | 61.6% | 61.2% | (many diffs) |
| 8 | human | 2160 | F11 | coagulation factor XI | XM_017007884.2 | 61.5% | 61% | (many diffs) |
| 9 | human | 2160 | F11 | coagulation factor XI | XM_017007885.2 | 61.5% | 61% | (many diffs) |
| 10 | human | 2160 | F11 | coagulation factor XI | NM_001354804.2 | 25.8% | 25.9% | 486_486delGins1390 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1944
- ORF length:
- 1875
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gattttctta tatcaagtgg tacatttcat tttatttact tcagtttctg 121 gtgaatgtgt gactcagttg ttgaaggaca cctgctttga aggaggggac attactacgg 181 tcttcacacc aagcgccaag tactgccagg tagtctgcac ttaccaccca agatgtttac 241 tcttcacttt cacggcggaa tcaccatctg aggatcccac ccgatggttt acttgtgtcc 301 tgaaagacag tgttacagaa acactgccaa gagtgaatag gacagcagcg atttctgggt 361 attctttcaa gcaatgctca caccaaataa gcgcttgcaa caaagacatt tatgtggacc 421 tagacatgaa gggcataaac tataacagct cagttgccaa gagtgctcaa gaatgccaag 481 aaagatgcac ggatgacgtc cactgccact ttttcacgta cgccacaagg cagtttccca 541 gcctggagca tcgtaacatt tgtctactga agcacaccca aacagggaca ccaaccagaa 601 taacgaagct cgataaagtg gtgtctggat tttcactgaa atcctgtgca ctttctaatc 661 tggcttgtat tagggacatt ttccctaata cggtgtttgc agacagcaac atcgacagtg 721 tcatggctcc cgatgctttt gtctgtggcc gaatctgcac tcatcatccc ggttgcttgt 781 tttttacctt cttttcccag gaatggccca aagaatctca aagaaatctt tgtctcctta 841 aaacatctga gagtggattg cccagtacac gcattaaaaa gagcaaagct ctttctggtt 901 tcagtctaca aagctgcagg cacagcatcc cagtgttctg ccattcttca ttttaccatg 961 acactgattt cttgggagaa gaactggata ttgttgctgc aaaaagtcac gaggcctgcc 1021 agaaactgtg caccaatgcc gtccgctgcc agttttttac ctatacccca gcccaagcat 1081 cctgcaacga agggaagggc aagtgttact taaagctttc ttcaaacgga tctccaacta 1141 aaatacttca cgggagagga ggcatctctg gatacacatt aaggttgtgt aaaatggata 1201 atgagtgtac caccaaaatc aagcccagga tcgttggagg aactgcgtct gttcgtggtg 1261 agtggccgtg gcaggtgacc ctgcacacaa cctcacccac tcagagacac ctgtgtggag 1321 gctccatcat tggaaaccag tggatattaa cagccgctca ctgtttctat ggggtagagt 1381 cacctaagat tttgcgtgtc tacagtggca ttttaaatca atctgaaata aaagaggaca 1441 catctttctt tggggttcaa gaaataataa tccatgatca gtataaaatg gcagaaagcg 1501 ggtatgatat tgccttgttg aaactggaaa ccacagtgaa ttacacagat tctcaacgac 1561 ccatatgcct gccttccaaa ggagatagaa atgtaatata cactgattgc tgggtgactg 1621 gatgggggta cagaaaacta agagacaaaa tacaaaatac tctccagaaa gccaagatac 1681 ccttagtgac caacgaagag tgccagaaga gatacagagg acataaaata acccataaga 1741 tgatctgtgc cggctacagg gaaggaggga aggacgcttg caagggagat tcgggaggcc 1801 ctctgtcctg caaacacaat gaggtctggc atctggtagg catcacgagc tggggcgaag 1861 gctgtgctca aagggagcgg ccaggtgttt acaccaacgt ggtcgagtac gtggactgga 1921 ttctggagaa aactcaagca gtgttgccaa ctttcttgta caaagtggtt ggtaagccta 1981 tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc 2041 gcgttaagtc gacaatcaac ctctggatta