Construct: ORF ccsbBroad304_00612

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001791.1_s304c1, BRDN0000400824
Derived from:
ccsbBroadEn_00612
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GALNS (2588)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_00612
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2588 GALNS galactosamine (N-acetyl)-6-... NM_000512.5 100% 100%
2 human 2588 GALNS galactosamine (N-acetyl)-6-... NM_001323544.2 93.7% 90.2% (many diffs)
3 human 2588 GALNS galactosamine (N-acetyl)-6-... XM_017023111.2 90.2% 84.7% (many diffs)
4 human 2588 GALNS galactosamine (N-acetyl)-6-... XM_017023112.2 89.5% 85.2% (many diffs)
5 human 2588 GALNS galactosamine (N-acetyl)-6-... XM_005256301.3 89.4% 86.1% (many diffs)
6 human 2588 GALNS galactosamine (N-acetyl)-6-... XM_011522982.2 84% 77.7% (many diffs)
7 human 2588 GALNS galactosamine (N-acetyl)-6-... NM_001323543.2 64.5% 64.5% 0_1ins555
8 human 2588 GALNS galactosamine (N-acetyl)-6-... XM_017023113.1 57.3% 54.3% (many diffs)
9 mouse 50917 Galns galactosamine (N-acetyl)-6-... NM_016722.4 83.5% 85% (many diffs)
10 mouse 50917 Galns galactosamine (N-acetyl)-6-... NM_001193645.1 70.6% 72.4% (many diffs)
11 mouse 50917 Galns galactosamine (N-acetyl)-6-... XR_387755.1 46.5% (many diffs)
12 mouse 50917 Galns galactosamine (N-acetyl)-6-... XR_387754.1 45.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1632
ORF length:
1566
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc ggcggttgtc gcggcgacga ggtggtggca gctgttgctg gtgctcagcg
121ccgcggggat gggggcctcg ggcgccccgc agccccccaa catcctgctc ctgctcatgg
181acgacatggg atggggtgac ctcggggtgt atggagagcc ctccagagag accccgaatt
241tggaccggat ggctgcagaa gggctgcttt tcccaaactt ctattctgcc aaccctctgt
301gctcgccatc gagggcggca ctgctcacag gacggctacc catccgcaat ggcttctaca
361ccaccaacgc ccatgccaga aacgcctaca caccgcagga gattgtgggc ggcatcccag
421actcggagca gctcctgccg gagcttctga agaaggccgg ctacgtcagc aagattgtcg
481gcaagtggca tctgggtcac aggccccagt tccaccccct gaagcacgga tttgatgagt
541ggtttggatc ccccaactgc cactttggac cttatgacaa caaggccagg cccaacatcc
601ctgtgtacag ggactgggag atggttggca gatattatga agaatttcct attaatctga
661agacggggga agccaacctc acccagatct acctgcagga agccctggac ttcattaaga
721gacaggcacg gcaccacccc tttttcctct actgggctgt cgacgccacg cacgcacccg
781tctatgcctc caaacccttc ttgggcacca gtcagcgagg gcggtatgga gacgccgtcc
841gggagattga tgacagcatt gggaagatac tggagctcct ccaagacctg cacgtcgcgg
901acaacacctt cgtcttcttc acgtcggaca acggcgctgc cctcatttcc gcccccgaac
961aaggtggcag caacggcccc tttctgtgtg ggaagcagac cacgtttgaa ggagggatga
1021gggagcctgc cctcgcatgg tggccagggc acgtcactgc aggccaggtg agccaccagc
1081tgggcagcat catggacctc ttcaccacca gcctggccct tgcgggcctg acgccgccca
1141gcgacagggc cattgatggc ctcaacctcc tccccaccct cctgcagggc cggctgatgg
1201acaggcctat cttctattac cgtggcgaca cgctgatggc ggccaccctc gggcagcaca
1261aggctcactt ctggacctgg accaactcct gggagaactt cagacagggc attgatttct
1321gccctgggca gaacgtttca ggggtcacaa ctcacaatct ggaagaccac acgaagctgc
1381ccctgatctt ccacctggga cgggacccag gggagaggtt ccccctcagc tttgccagcg
1441ccgagtacca ggaggccctc agcaggatca cctcggtcgt ccagcagcac caggaggcct
1501tggtccccgc gcagccccag ctcaacgtgt gcaactgggc ggtcatgaac tgggcacctc
1561cgggctgtga aaagttaggg aagtgtctga cacctccaga atccattccc aagaagtgcc
1621tctggtccca ctacccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc
1681tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga
1741caatcaacct ctggatta

Download FASTA (ORF) (Full)