Construct: ORF ccsbBroad304_00754

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006075.1_s304c1, BRDN0000402573
Derived from:
ccsbBroadEn_00754
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HMGN2 (3151)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_00754
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3151 HMGN2 high mobility group nucleos... NM_005517.4 100% 100%
2 human 10473 HMGN4 high mobility group nucleos... NM_006353.3 86.2% 86.6% (many diffs)
3 human 10473 HMGN4 high mobility group nucleos... XM_017010172.2 86.2% 86.6% (many diffs)
4 human 10473 HMGN4 high mobility group nucleos... XM_017010173.2 86.2% 86.6% (many diffs)
5 human 107986383 LOC107986383 uncharacterized LOC107986383 XR_001742516.1 27.4% (many diffs)
6 human 283651 HMGN2P46 high mobility group nucleos... NR_022014.1 12.7% (many diffs)
7 mouse 15331 Hmgn2 high mobility group nucleos... NM_016957.3 93.3% 96.6% (many diffs)
8 mouse 627375 Gm6750 predicted gene 6750 XR_873085.1 58.7% (many diffs)
9 mouse 100503799 Gm7931 predicted pseudogene 7931; ... XR_868409.2 21.1% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
336
ORF length:
270
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgcc caagagaaag gctgaagggg atgctaaggg agataaagca aaggtgaagg
121acgaaccaca gagaagatcc gcgaggttgt ctgctaaacc tgctcctcca aagccagagc
181ccaagcctaa aaaggcccct gcaaagaagg gagagaaggt acccaaaggg aaaaagggaa
241aagctgatgc tggcaaggag gggaataacc ctgcagaaaa tggagatgcc aaaacagacc
301aggcacagaa agctgaaggt gctggagatg ccaagtgccc aactttcttg tacaaagtgg
361ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg
421ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta

Download FASTA (ORF) (Full)