Construct: ORF ccsbBroad304_00793

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001875.1_s304c1, BRDN0000400309
Derived from:
ccsbBroadEn_00793
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HSD17B4 (3295)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_00793
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3295 HSD17B4 hydroxysteroid 17-beta dehy... NM_000414.4 100% 100%
2 human 3295 HSD17B4 hydroxysteroid 17-beta dehy... NM_001199292.2 97.5% 97.5% 57_58ins54
3 human 3295 HSD17B4 hydroxysteroid 17-beta dehy... NM_001292027.2 95.6% 94.9% (many diffs)
4 human 3295 HSD17B4 hydroxysteroid 17-beta dehy... NM_001199291.3 95.2% 91.4% (many diffs)
5 human 3295 HSD17B4 hydroxysteroid 17-beta dehy... NM_001292028.2 80.9% 80.9% 0_1ins411;14_15insGTATGGAAG
6 mouse 15488 Hsd17b4 hydroxysteroid (17-beta) de... NM_008292.4 84.8% 86.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2274
ORF length:
2208
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggg ctcaccgctg aggttcgacg ggcgggtggt actggtcacc ggcgcggggg
121caggattggg ccgagcctat gccctggctt ttgcagaaag aggagcgtta gttgttgtga
181atgatttggg aggggacttc aaaggagttg gtaaaggctc cttagctgct gataaggttg
241ttgaagaaat aagaaggaga ggtggaaaag cagtggccaa ctatgattca gtggaagaag
301gagagaaggt tgtgaagaca gccctggatg cttttggaag aatagatgtt gtggtcaaca
361atgctggaat tctgagggat cgttcctttg ctaggataag tgatgaagac tgggatataa
421tccacagagt tcatttgcgg ggttcattcc aagtgacacg ggcagcatgg gaacacatga
481agaaacagaa gtatggaagg attattatga cttcatcagc ttcaggaata tatggcaact
541ttggccaggc caattatagt gctgcaaagt tgggtcttct gggccttgca aattctcttg
601caattgaagg caggaaaagc aacattcatt gtaacaccat tgctcctaat gcgggatcac
661ggatgactca gacagttatg cctgaagatc ttgtggaagc cctgaagcca gagtatgtgg
721cacctcttgt cctttggctt tgtcacgaga gttgtgagga gaatggtggc ttgtttgagg
781ttggagcagg atggattgga aaattacgct gggagcggac tcttggagct attgtaagac
841aaaagaatca cccaatgact cctgaggcag tcaaggctaa ctggaagaag atctgtgact
901ttgagaatgc cagcaagcct cagagtatcc aagaatcaac tggcagtata attgaagttc
961tgagtaaaat agattcagaa ggaggagttt cagcaaatca tactagtcgt gcaacgtcta
1021cagcaacatc aggatttgct ggagctattg gccagaaact ccctccattt tcttatgctt
1081atacggaact ggaagctatt atgtatgccc ttggagtggg agcgtcaatc aaggatccaa
1141aagatttgaa atttatttat gaaggaagtt ctgatttctc ctgtttgccc accttcggag
1201ttatcatagg tcagaaatct atgatgggtg gaggattagc agaaattcct ggactttcaa
1261tcaactttgc aaaggttctt catggagagc agtacttaga gttatataaa ccacttccca
1321gagcaggaaa attaaaatgt gaagcagttg ttgctgatgt cctagataaa ggatccggtg
1381tagtgattat tatggatgtc tattcttatt ctgagaagga acttatatgc cacaatcagt
1441tctctctctt tcttgttggc tctggaggct ttggtggaaa acggacatca gacaaagtca
1501aggtagctgt agccatacct aatagacctc ctgatgctgt acttacagat accacctctc
1561ttaatcaggc tgctttgtac cgcctcagtg gagactggaa tcccttacac attgatccta
1621actttgctag tctagcaggt tttgacaagc ccatattaca tggattatgt acatttggat
1681tttctgccag gcgtgtgtta cagcagtttg cagataatga tgtgtcaaga ttcaaggcaa
1741ttaaggctcg ttttgcaaaa ccagtatatc caggacaaac tctacaaact gagatgtgga
1801aggaaggaaa cagaattcat tttcaaacca aggtccaaga aactggagac attgtcattt
1861caaatgcata tgtggatctt gcaccaacat ctggtacttc agctaagaca ccctctgagg
1921gcgggaagct tcagagtacc tttgtatttg aggaaatagg acgccgccta aaggatattg
1981ggcctgaggt ggtgaagaaa gtaaatgctg tatttgagtg gcatataacc aaaggcggaa
2041atattggggc taagtggact attgacctga aaagtggttc tggaaaagtg taccaaggcc
2101ctgcaaaagg tgctgctgat acaacaatca tactttcaga tgaagatttc atggaggtgg
2161tcctgggcaa gcttgaccct cagaaggcat tctttagtgg caggctgaag gccagaggga
2221acatcatgct gagccagaaa cttcagatga ttcttaaaga ctacgccaag ctctgcccaa
2281ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta
2341cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)