Construct: ORF ccsbBroad304_00953
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014778.1_s304c1, BRDN0000401004
- Derived from:
- ccsbBroadEn_00953
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LY9 (4063)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_00953
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4063 | LY9 | lymphocyte antigen 9 | NM_001033667.3 | 100% | 100% | |
| 2 | human | 4063 | LY9 | lymphocyte antigen 9 | NM_001261457.2 | 31.7% | 29.2% | (many diffs) |
| 3 | human | 4063 | LY9 | lymphocyte antigen 9 | XM_011509560.1 | 28.2% | 23.3% | (many diffs) |
| 4 | human | 4063 | LY9 | lymphocyte antigen 9 | NM_001261456.2 | 28% | 25.7% | (many diffs) |
| 5 | human | 4063 | LY9 | lymphocyte antigen 9 | XM_017001303.1 | 27.8% | 23% | (many diffs) |
| 6 | human | 4063 | LY9 | lymphocyte antigen 9 | XM_011509556.1 | 27.6% | 22.8% | (many diffs) |
| 7 | human | 4063 | LY9 | lymphocyte antigen 9 | NM_002348.4 | 27.4% | 25.1% | (many diffs) |
| 8 | human | 4063 | LY9 | lymphocyte antigen 9 | XM_017001302.1 | 27.2% | 22.5% | (many diffs) |
| 9 | human | 4063 | LY9 | lymphocyte antigen 9 | XM_017001301.1 | 27% | 24.8% | (many diffs) |
| 10 | human | 4063 | LY9 | lymphocyte antigen 9 | XM_017001300.1 | 24.9% | 18.9% | (many diffs) |
| 11 | human | 4063 | LY9 | lymphocyte antigen 9 | XM_011509552.1 | 24.9% | 20.5% | (many diffs) |
| 12 | human | 4063 | LY9 | lymphocyte antigen 9 | XM_017001299.1 | 24.6% | 20.3% | (many diffs) |
| 13 | human | 4063 | LY9 | lymphocyte antigen 9 | XM_017001298.1 | 24.3% | 20% | (many diffs) |
| 14 | human | 4063 | LY9 | lymphocyte antigen 9 | XM_011509550.1 | 24.1% | 19.9% | (many diffs) |
| 15 | human | 4063 | LY9 | lymphocyte antigen 9 | XM_011509549.1 | 24.1% | 19.9% | (many diffs) |
| 16 | human | 4063 | LY9 | lymphocyte antigen 9 | XM_011509548.1 | 24.1% | 19.8% | (many diffs) |
| 17 | human | 4063 | LY9 | lymphocyte antigen 9 | XM_017001297.1 | 23.8% | 19.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 645
- ORF length:
- 579
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggt ggcaccaaag agtcacacag atgactgggc tcctgggcct ttctccagta 121 agccacagag gagtcagctg caaatattct cttctgttct acagacctct ctcctcttcc 181 tgctcatggg actaagagcc tctggaaagg actcagcccc aacagtggtg tcagggatcc 241 tagggggttc cgtgactctc cccctaaaca tctcagtaga cacagagatt gagaacgtca 301 tctggattgg tcccaaaaat gctcttgctt tcgcacgtcc caaagaaaat gtaaccatta 361 tggtcaaaag ctacctgggc cgactagaca tcaccaagtg gagttactcc ctgtgcatca 421 gcaatctgac tctgaatgat gcaggatcct acaaagccca gataaaccaa aggaattttg 481 aagtcaccac tgaggaggaa ttcaccctgt tcgtctatgc accatttatt gaaaagttgt 541 ccgtccacgt catcgagggt gaccaccgca cactcctgga gggcagcggc ctggagtcca 601 tcatcagcac cctggctgag ccacgtgtga gcgtgcggga gggctaccca actttcttgt 661 acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat 721 gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a