Construct: ORF ccsbBroad304_01019

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011885.1_s304c1, BRDN0000409034
Derived from:
ccsbBroadEn_01019
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MLH1 (4292)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_01019
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4292 MLH1 mutL homolog 1 NM_000249.3 100% 100%
2 human 4292 MLH1 mutL homolog 1 NM_001354628.1 95.8% 95.8% 1892_1893ins93
3 human 4292 MLH1 mutL homolog 1 NM_001354629.1 95.6% 95.6% 206_207ins99
4 human 4292 MLH1 mutL homolog 1 NM_001354630.1 92.7% 92.7% 1730_1731ins165
5 human 4292 MLH1 mutL homolog 1 NM_001258271.1 90.8% 90.8% 1894_1895ins207
6 human 4292 MLH1 mutL homolog 1 XM_005265161.2 90.8% 90.8% 676_677ins207
7 human 4292 MLH1 mutL homolog 1 NM_001167617.2 87% 86.6% 0_1ins289;9_10insGAGGT
8 human 4292 MLH1 mutL homolog 1 NM_001354620.1 87% 86.6% 0_1ins289;9_10insGAGGT
9 human 4292 MLH1 mutL homolog 1 NM_001167618.2 68.1% 68.1% 0_1ins723
10 human 4292 MLH1 mutL homolog 1 NM_001167619.2 68.1% 68.1% 0_1ins723
11 human 4292 MLH1 mutL homolog 1 NM_001258273.1 68.1% 68.1% 0_1ins723
12 human 4292 MLH1 mutL homolog 1 NM_001258274.2 68.1% 68.1% 0_1ins723
13 human 4292 MLH1 mutL homolog 1 NM_001354615.1 68.1% 68.1% 0_1ins723
14 human 4292 MLH1 mutL homolog 1 NM_001354616.1 68.1% 68.1% 0_1ins723
15 human 4292 MLH1 mutL homolog 1 NM_001354617.1 68.1% 68.1% 0_1ins723
16 human 4292 MLH1 mutL homolog 1 NM_001354618.1 68.1% 68.1% 0_1ins723
17 human 4292 MLH1 mutL homolog 1 NM_001354619.1 68.1% 68.1% 0_1ins723
18 human 4292 MLH1 mutL homolog 1 NM_001354621.1 54.8% 54.8% 0_1ins1023
19 human 4292 MLH1 mutL homolog 1 NM_001354622.1 54.8% 54.8% 0_1ins1023
20 human 4292 MLH1 mutL homolog 1 NM_001354623.1 54.8% 54.8% 0_1ins1023
21 human 4292 MLH1 mutL homolog 1 XM_017006450.2 54.8% 54.8% 0_1ins1023
22 human 4292 MLH1 mutL homolog 1 NM_001354624.1 52.6% 52.6% 0_1ins1074
23 human 4292 MLH1 mutL homolog 1 NM_001354625.1 52.6% 52.6% 0_1ins1074
24 human 4292 MLH1 mutL homolog 1 NM_001354626.1 52.6% 52.6% 0_1ins1074
25 human 4292 MLH1 mutL homolog 1 NM_001354627.1 52.6% 52.6% 0_1ins1074
26 mouse 17350 Mlh1 mutL homolog 1 NM_026810.2 86.7% 88.4% (many diffs)
27 mouse 17350 Mlh1 mutL homolog 1 XM_011242935.2 79.9% 79.7% (many diffs)
28 mouse 17350 Mlh1 mutL homolog 1 XR_379848.2 65.1% (many diffs)
29 mouse 17350 Mlh1 mutL homolog 1 XR_001778805.1 64% (many diffs)
30 mouse 17350 Mlh1 mutL homolog 1 XR_379849.3 59.6% (many diffs)
31 mouse 17350 Mlh1 mutL homolog 1 XM_006511946.3 58.2% 53.9% (many diffs)
32 mouse 17350 Mlh1 mutL homolog 1 NM_001324522.1 58.1% 58.2% (many diffs)
33 mouse 17350 Mlh1 mutL homolog 1 XM_006511948.3 58.1% 58.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2334
ORF length:
2268
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtc gttcgtggca ggggttattc ggcggctgga cgagacagtg gtgaaccgca
121tcgcggcggg ggaagttatc cagcggccag ctaatgctat caaagagatg attgagaact
181gtttagatgc aaaatccaca agtattcaag tgattgttaa agagggaggc ctgaagttga
241ttcagatcca agacaatggc accgggatca ggaaagaaga tctggatatt gtatgtgaaa
301ggttcactac tagtaaactg cagtcctttg aggatttagc cagtatttct acctatggct
361ttcgaggtga ggctttggcc agcataagcc atgtggctca tgttactatt acaacgaaaa
421cagctgatgg aaagtgtgca tacagagcaa gttactcaga tggaaaactg aaagcccctc
481ctaaaccatg tgctggcaat caagggaccc agatcacggt ggaggacctt ttttacaaca
541tagccacgag gagaaaagct ttaaaaaatc caagtgaaga atatgggaaa attttggaag
601ttgttggcag gtattcagta cacaatgcag gcattagttt ctcagttaaa aaacaaggag
661agacagtagc tgatgttagg acactaccca atgcctcaac cgtggacaat attcgctcca
721tctttggaaa tgctgttagt cgagaactga tagaaattgg atgtgaggat aaaaccctag
781ccttcaaaat gaatggttac atatccaatg caaactactc agtgaagaag tgcatcttct
841tactcttcat caaccatcgt ctggtagaat caacttcctt gagaaaagcc atagaaacag
901tgtatgcagc ctatttgccc aaaaacacac acccattcct gtacctcagt ttagaaatca
961gtccccagaa tgtggatgtt aatgtgcacc ccacaaagca tgaagttcac ttcctgcacg
1021aggagagcat cctggagcgg gtgcagcagc acatcgagag caagctcctg ggctccaatt
1081cctccaggat gtacttcacc cagactttgc taccaggact tgctggcccc tctggggaga
1141tggttaaatc cacaacaagt ctgacctcgt cttctacttc tggaagtagt gataaggtct
1201atgcccacca gatggttcgt acagattccc gggaacagaa gcttgatgca tttctgcagc
1261ctctgagcaa acccctgtcc agtcagcccc aggccattgt cacagaggat aagacagata
1321tttctagtgg cagggctagg cagcaagatg aggagatgct tgaactccca gcccctgctg
1381aagtggctgc caaaaatcag agcttggagg gggatacaac aaaggggact tcagaaatgt
1441cagagaagag aggacctact tccagcaacc ccagaaagag acatcgggaa gattctgatg
1501tggaaatggt ggaagatgat tcccgaaagg aaatgactgc agcttgtacc ccccggagaa
1561ggatcattaa cctcactagt gttttgagtc tccaggaaga aattaatgag cagggacatg
1621aggttctccg ggagatgttg cataaccact ccttcgtggg ctgtgtgaat cctcagtggg
1681ccttggcaca gcatcaaacc aagttatacc ttctcaacac caccaagctt agtgaagaac
1741tgttctacca gatactcatt tatgattttg ccaattttgg tgttctcagg ttatcggagc
1801cagcaccgct ctttgacctt gccatgcttg ccttagatag tccagagagt ggctggacag
1861aggaagatgg tcccaaagaa ggacttgctg aatacattgt tgagtttctg aagaagaagg
1921ctgagatgct tgcagactat ttctctttgg aaattgatga ggaagggaac ctgattggat
1981taccccttct gattgacaac tatgtgcccc ctttggaggg actgcctatc ttcattcttc
2041gactagccac tgaggtgaat tgggacgaag aaaaggaatg ttttgaaagc ctcagtaaag
2101aatgcgctat gttctattcc atccggaagc agtacatatc tgaggagtcg accctctcag
2161gccagcagag tgaagtgcct ggctccattc caaactcctg gaagtggact gtggaacaca
2221ttgtctataa agccttgcgc tcacacattc tgcctcctaa acatttcaca gaagatggaa
2281atatcctgca gcttgctaac ctgcctgatc tatacaaagt ctttgagagg tgttacccaa
2341ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta
2401cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta

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